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NEWS.md

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Changes in version 1.8.0

New features

  • The import method for h5 files now includes all rowData which typically includes "ID", "Symbol", and "Type" columns.

Bug fixes and minor improvements

  • rownames are set to first column in the features.tsv.gz data (rownames for h5 files are determined by HDF5Array::TENxMatrix)
  • TENxH5 now tests whether there is a /matrix/features/interval dataset in the h5 file. It sets ranges to NA_character_ when interval data is not found.

Changes in version 1.6.0

Bug fixes and minor improvements

  • Use rowData from filtered SingleCellExperiment object (@MalteThodberg, #5)
  • Add examples to TENxFileList documentation and improve constructor function

Changes in version 1.4.0

Bug fixes and minor improvements

  • Skip unit tests when remote H5 access is not configured.

Changes in version 1.2.0

New features

  • TENxTSV class has been added to handle compressed and uncompressed TSV files.

Bug fixes and minor improvements

  • The import method for TENxFileList was returning a nested SummarizedExperiment within the SingleCellExperiment. The counts and assay(..., i="counts") methods should only return the bare Matrix rather than the embedded SummarizedExperiment (@dgastn, #2).

Changes in version 1.0.0

  • Package released in Bioconductor!