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@waldronlab

Waldron Lab at the CUNY SPH

Software and educational materials from the Waldron lab for computational biostatistics at the CUNY SPH in New York City

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  1. MultiAssayExperiment MultiAssayExperiment Public

    Bioconductor package for management of multi-assay data

    R 70 32

  2. curatedMetagenomicData curatedMetagenomicData Public

    Curated Metagenomic Data of the Human Microbiome

    R 127 28

  3. curatedTCGAData curatedTCGAData Public

    Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

    R 44 7

  4. cBioPortalData cBioPortalData Public

    Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment

    R 30 13

  5. presentations presentations Public

    A repository for public presentations

    TeX 6 9

  6. BugSigDB BugSigDB Public

    A microbial signatures database

    JavaScript 7 6

Repositories

Showing 10 of 106 repositories
  • BugSigDBExports Public

    BugSigDB data files

    waldronlab/BugSigDBExports’s past year of commit activity
    R 1 3 5 0 Updated Dec 3, 2024
  • MicrobiomeBenchmarkDataAnalyses Public

    Analyses using the datasets provided by the MicrobiomeBenchmarkData package.

    waldronlab/MicrobiomeBenchmarkDataAnalyses’s past year of commit activity
    HTML 0 0 0 0 Updated Nov 30, 2024
  • BugSigDBEnrich Public

    A ShinyApp to perform enrichemnt analysis with BugSigDB signatures.

    waldronlab/BugSigDBEnrich’s past year of commit activity
    HTML 0 0 2 0 Updated Nov 27, 2024
  • bioconductor Public template

    Docker container built on bioconductor/bioconductor_docker

    waldronlab/bioconductor’s past year of commit activity
    Shell 8 5 3 (1 issue needs help) 0 Updated Nov 22, 2024
  • taxPPro Public
    waldronlab/taxPPro’s past year of commit activity
    R 1 2 1 1 Updated Nov 21, 2024
  • TENxIO Public

    Bioconductor interface to 10X files

    waldronlab/TENxIO’s past year of commit activity
    R 0 0 1 0 Updated Nov 21, 2024
  • SingleCellMultiModal Public

    Single Cell multimodal data scripts for downloading datasets

    waldronlab/SingleCellMultiModal’s past year of commit activity
    R 17 9 1 0 Updated Nov 20, 2024
  • MultiAssayExperiment Public

    Bioconductor package for management of multi-assay data

    waldronlab/MultiAssayExperiment’s past year of commit activity
    R 70 32 4 0 Updated Nov 19, 2024
  • cBioPortalData Public

    Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment

    waldronlab/cBioPortalData’s past year of commit activity
    R 30 13 4 0 Updated Nov 18, 2024
  • HGNChelper Public

    Identify and correct invalid gene symbols

    waldronlab/HGNChelper’s past year of commit activity
    R 55 9 4 0 Updated Nov 16, 2024
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