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Add trimgalore #117

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merged 13 commits into from
Sep 23, 2024
Merged

Add trimgalore #117

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8ab8f0b
add trimgalore
sainirmayi Aug 5, 2024
2f96b46
fix test
sainirmayi Aug 5, 2024
08b168a
make output arguments optional
sainirmayi Aug 5, 2024
cfd3857
fix script
sainirmayi Aug 5, 2024
b725d4a
Merge main into add_trimgalore
rcannood Aug 13, 2024
24a9297
fix script and update test
sainirmayi Aug 19, 2024
9039609
update changelog
sainirmayi Aug 19, 2024
b355852
Merge remote-tracking branch 'origin/main' into add_trimgalore
sainirmayi Sep 10, 2024
89fb357
apply code review suggestions
sainirmayi Sep 10, 2024
f460a29
Merge remote-tracking branch 'origin/main' into add_trimgalore
sainirmayi Sep 19, 2024
9073515
separate input fastqc file arguments from other arguments
sainirmayi Sep 19, 2024
58fff63
Merge branch 'main' into add_trimgalore
sainirmayi Sep 19, 2024
6805838
apply suggested change
sainirmayi Sep 19, 2024
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2 changes: 2 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -75,6 +75,8 @@
- `kallisto_quant`: Quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads (PR #152).


* `trimgalore`: Quality and adapter trimming for fastq files (PR #117).

## MINOR CHANGES

* `busco` components: update BUSCO to `5.7.1` (PR #72).
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