Cutadapt: fix non-functional action parameter (#161)

* Cutadapt: fix non-functional action parameter * Add PR number
viash-hub · Oct 3, 2024 · 0a0edca · 0a0edca
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -13,6 +13,10 @@
 
 * `falco`: Fix a typo in the `--reverse_complement` argument (PR #157).
 
+## BUG FIXES
+
+* `cutadapt`: fix the the non-functional `action` parameter (PR #161).
+
 ## MINOR CHANGES
 
 * Upgrade to Viash 0.9.0.

diff --git a/src/cutadapt/script.sh b/src/cutadapt/script.sh
@@ -108,7 +108,7 @@ input_args=$(echo \
   ${par_overlap:+--overlap "${par_overlap}"} \
   ${par_match_read_wildcards:+--match-read-wildcards} \
   ${par_no_match_adapter_wildcards:+--no-match-adapter-wildcards} \
-  ${par_action:+--action "${par_action}"} \
+  ${par_action:+--action="${par_action}"} \
   ${par_revcomp:+--revcomp} \
 )
 debug "Arguments to cutadapt:"