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updated read count to reflect computation of depth in bandage
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gf777 committed May 31, 2024
1 parent 3da628a commit 543de8d
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion src/kreeq.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -1000,7 +1000,7 @@ void DBG::DBGgraphToGFA() {
std::string* inSequence = new std::string(reverseHash(pair.first));
Sequence* sequence = new Sequence {std::to_string(idCounter++), "", inSequence};
sequence->seqPos = seqPos; // remember the order
std::vector<Tag> inTags = {Tag{'i',"RC",std::to_string(pair.second.cov)}};
std::vector<Tag> inTags = {Tag{'i',"RC",std::to_string(pair.second.cov*k)}};
GFAsubgraph.appendSegment(sequence, inTags);
seqPos++;
}
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