fixed test files

vgl-hub · Jun 19, 2024 · 2fc6c07 · 2fc6c07
1 parent d8bef78
commit 2fc6c07
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Showing 3 changed files with 16 additions and 4 deletions.
diff --git a/src/generate-tests.cpp b/src/generate-tests.cpp
@@ -80,8 +80,8 @@ int main(void) {
     }
     // test subgraph
     file_args = {
-        {{"-d testFiles/test1.kreeq -f testFiles/random1.fasta --search-depth 0"}, {""}},
-        {{"-d testFiles/random5.kreeq -f testFiles/random5.fasta"}, {""}}
+        {{"-d testFiles/test1.kreeq -f testFiles/random1.fasta --search-depth 0 --do-not-collapse-nodes"}, {""}},
+        {{"-d testFiles/random5.kreeq -f testFiles/random5.fasta --do-not-collapse-nodes"}, {""}}
     //  {{set of test inputs}, {list of command line args to run with}}
     };
     for(const auto &pair : file_args) {

diff --git a/validateFiles/test.36.tst b/validateFiles/test.36.tst
@@ -1,5 +1,11 @@
-kreeq subgraph -d testFiles/random5.kreeq -f testFiles/random5.fasta 
+kreeq subgraph -d testFiles/random5.kreeq -f testFiles/random5.fasta --do-not-collapse-nodes 
 embedded
+Subgraph summary statistics:
+Total kmers: 158
+Unique kmers: 84
+Distinct kmers: 121
+Missing kmers: 4398046510983
+Total edges: 203
 +++Assembly summary+++: 
 # scaffolds: 0
 Total scaffold length: 0

diff --git a/validateFiles/test.37.tst b/validateFiles/test.37.tst
@@ -1,5 +1,11 @@
-kreeq subgraph -d testFiles/test1.kreeq -f testFiles/random1.fasta --search-depth 0 
+kreeq subgraph -d testFiles/test1.kreeq -f testFiles/random1.fasta --search-depth 0 --do-not-collapse-nodes 
 embedded
+Subgraph summary statistics:
+Total kmers: 979
+Unique kmers: 13
+Distinct kmers: 94
+Missing kmers: 4398046511010
+Total edges: 158
 +++Assembly summary+++: 
 # scaffolds: 0
 Total scaffold length: 0