Update graph-builder.cpp

vgl-hub · May 9, 2024 · 0af74a9 · 0af74a9
1 parent 16c4484
commit 0af74a9
Showing 1 changed file with 5 additions and 2 deletions.
diff --git a/src/graph-builder.cpp b/src/graph-builder.cpp
@@ -802,12 +802,15 @@ bool DBG::mergeSubMaps(parallelMap* map1, parallelMap* map2, uint8_t subMapIndex
         auto got = submap2.find(pair.first); // insert or find this kmer in the hash table
         if (got == submap2.end()) {
             submap2.insert(pair);
+            auto got = map32.find(pair.first); // check if this is already a high-copy kmer
+            if (got != map32.end())
+                overflow = true;
         }else{
 
             DBGkmer& dbgkmerMap = got->second;
-            auto got2 = map32.find(pair.first); // check if this is already a high-copy kmer
+            auto got = map32.find(pair.first); // check if this is already a high-copy kmer
 
-            if (got2 == map32.end()) {
+            if (got == map32.end()) {
 
                 if (255 - dbgkmerMap.cov < pair.second.cov)
                     overflow = true;