Build in memory if temp_dir is not given. #127
tmaklinAnnotations
11 warnings
|
using `clone` on type `MapOpts` which implements the `Copy` trait:
src/cli/main.rs#L287
warning: using `clone` on type `MapOpts` which implements the `Copy` trait
--> src/cli/main.rs:287:56
|
287 | res.append(&mut kbo::map(ref_contig, &sbwt, &lcs, map_opts.clone()));
| ^^^^^^^^^^^^^^^^ help: try removing the `clone` call: `map_opts`
|
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#clone_on_copy
|
|
using `clone` on type `usize` which implements the `Copy` trait:
src/cli/main.rs#L212
warning: using `clone` on type `usize` which implements the `Copy` trait
--> src/cli/main.rs:212:13
|
212 | ... ref_bases.clone()
| ^^^^^^^^^^^^^^^^^ help: try dereferencing it: `*ref_bases`
|
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#clone_on_copy
|
|
using `clone` on type `FindOpts` which implements the `Copy` trait:
src/cli/main.rs#L208
warning: using `clone` on type `FindOpts` which implements the `Copy` trait
--> src/cli/main.rs:208:73
|
208 | res.append(&mut kbo::find(&seq.reverse_complement(), &sbwt, &lcs, find_opts.clone())
| ^^^^^^^^^^^^^^^^^ help: try removing the `clone` call: `find_opts`
|
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#clone_on_copy
|
|
this expression creates a reference which is immediately dereferenced by the compiler:
src/cli/main.rs#L208
warning: this expression creates a reference which is immediately dereferenced by the compiler
--> src/cli/main.rs:208:67
|
208 | res.append(&mut kbo::find(&seq.reverse_complement(), &sbwt, &lcs, find_opts.clone())
| ^^^^ help: change this to: `lcs`
|
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow
|
|
this expression creates a reference which is immediately dereferenced by the compiler:
src/cli/main.rs#L208
warning: this expression creates a reference which is immediately dereferenced by the compiler
--> src/cli/main.rs:208:60
|
208 | res.append(&mut kbo::find(&seq.reverse_complement(), &sbwt, &lcs, find_opts.clone())
| ^^^^^ help: change this to: `sbwt`
|
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow
|
|
using `clone` on type `usize` which implements the `Copy` trait:
src/cli/main.rs#L204
warning: using `clone` on type `usize` which implements the `Copy` trait
--> src/cli/main.rs:204:13
|
204 | ... ref_bases.clone()
| ^^^^^^^^^^^^^^^^^ help: try dereferencing it: `*ref_bases`
|
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#clone_on_copy
|
|
using `clone` on type `FindOpts` which implements the `Copy` trait:
src/cli/main.rs#L200
warning: using `clone` on type `FindOpts` which implements the `Copy` trait
--> src/cli/main.rs:200:52
|
200 | res.append(&mut kbo::find(&seq, &sbwt, &lcs, find_opts.clone())
| ^^^^^^^^^^^^^^^^^ help: try removing the `clone` call: `find_opts`
|
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#clone_on_copy
= note: `#[warn(clippy::clone_on_copy)]` on by default
|
|
this expression creates a reference which is immediately dereferenced by the compiler:
src/cli/main.rs#L200
warning: this expression creates a reference which is immediately dereferenced by the compiler
--> src/cli/main.rs:200:46
|
200 | res.append(&mut kbo::find(&seq, &sbwt, &lcs, find_opts.clone())
| ^^^^ help: change this to: `lcs`
|
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow
|
|
this expression creates a reference which is immediately dereferenced by the compiler:
src/cli/main.rs#L200
warning: this expression creates a reference which is immediately dereferenced by the compiler
--> src/cli/main.rs:200:39
|
200 | res.append(&mut kbo::find(&seq, &sbwt, &lcs, find_opts.clone())
| ^^^^^ help: change this to: `sbwt`
|
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow
= note: `#[warn(clippy::needless_borrow)]` on by default
|
|
using `clone` on type `f64` which implements the `Copy` trait:
src/lib.rs#L506
warning: using `clone` on type `f64` which implements the `Copy` trait
--> src/lib.rs:506:33
|
506 | match_opts.max_error_prob = find_opts.max_error_prob.clone();
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: try removing the `clone` call: `find_opts.max_error_prob`
|
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#clone_on_copy
= note: `#[warn(clippy::clone_on_copy)]` on by default
|
|
field assignment outside of initializer for an instance created with Default::default():
src/lib.rs#L506
warning: field assignment outside of initializer for an instance created with Default::default()
--> src/lib.rs:506:5
|
506 | match_opts.max_error_prob = find_opts.max_error_prob.clone();
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
note: consider initializing the variable with `MatchOpts { max_error_prob: find_opts.max_error_prob.clone() }` and removing relevant reassignments
--> src/lib.rs:505:5
|
505 | let mut match_opts = MatchOpts::default();
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#field_reassign_with_default
= note: `#[warn(clippy::field_reassign_with_default)]` on by default
|