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Fix iteration over Pandas Series #1262

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Jul 11, 2024
Merged

Fix iteration over Pandas Series #1262

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4 changes: 2 additions & 2 deletions scvelo/inference/_metabolic_labeling.py
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Original file line number Diff line number Diff line change
Expand Up @@ -305,7 +305,7 @@ def get_counts(gex, labeling_time_mask, obs_dist_argsort, obs_id, neighbors):
# IDs of observations in each labeling time to consider
obs_ids = {
idx: obs_dist_argsort[idx][obs_id, : (val + 1)]
for idx, val in neighbors.iteritems()
for idx, val in neighbors.items()
}
# Stacked counts to consider
counts = np.hstack(
Expand Down Expand Up @@ -452,7 +452,7 @@ def _fit(obs_id: int):
)

_labeling_times = np.hstack(
[[idx] * (val + 1) for idx, val in neighbors.iteritems()]
[[idx] * (val + 1) for idx, val in neighbors.items()]
)

experiment = (
Expand Down
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