Hide unused parameters

soedinglab · Feb 16, 2021 · 32b2c0d · 32b2c0d
1 parent de1c05b
commit 32b2c0d
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Showing 2 changed files with 1 addition and 4 deletions.
diff --git a/src/commons/LocalParameters.h b/src/commons/LocalParameters.h
@@ -128,9 +128,7 @@ class LocalParameters : public Parameters {
         createsetdbworkflow.push_back(&PARAM_EXTRACTORF_SPACER);
         createsetdbworkflow = combineList(createsetdbworkflow, translatenucs);
 
-        predictmatchworkflow = combineList(searchworkflow, besthitbyset);
-        predictmatchworkflow = combineList(predictmatchworkflow, combinepvalbyset);
-        predictmatchworkflow = combineList(predictmatchworkflow, filtermatchbyfdr);
+        predictmatchworkflow = combineList(searchworkflow, filtermatchbyfdr);
         predictmatchworkflow = combineList(predictmatchworkflow, summarizeresults);
         predictmatchworkflow = combineList(predictmatchworkflow, findpam);
         predictmatchworkflow.push_back(&PARAM_RESTRICT_RANKS_MODE);

diff --git a/src/workflow/PredictMatch.cpp b/src/workflow/PredictMatch.cpp
@@ -73,7 +73,6 @@ int predictmatch(int argc, const char **argv, const Command& command) {
     cmd.addVariable("SEARCH_PAR", par.createParameterString(par.searchworkflow).c_str());
     cmd.addVariable("PROTALN2NUCL_PAR", par.createParameterString(par.proteinaln2nucl).c_str());
     cmd.addVariable("BESTHITBYSET_PAR", par.createParameterString(par.besthitbyset).c_str());
-    cmd.addVariable("COMBINEPVALPERSET_PAR", par.createParameterString(par.combinepvalbyset).c_str());
     cmd.addVariable("FILTERMATCHBYFDR_PAR", par.createParameterString(par.filtermatchbyfdr).c_str());
     par.fdrCutoff = par.taxFdrCutoff;
     cmd.addVariable("FILTERMATCHBYFDRTAX_PAR", par.createParameterString(par.filtermatchbyfdr).c_str());