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@soedinglab

Söding Lab

Quantitative and Computational Biology

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  1. MMseqs2 MMseqs2 Public

    MMseqs2: ultra fast and sensitive search and clustering suite

    C 1.5k 202

  2. hh-suite hh-suite Public

    Remote protein homology detection suite.

    C 552 136

  3. WIsH WIsH Public

    Predict prokaryotic host for phage metagenomic sequences

    C++ 52 10

  4. BaMMmotif2 BaMMmotif2 Public

    Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by higher-order Markov models.

    C++ 13 5

  5. PEnG-motif PEnG-motif Public

    PEnG-motif is an open-source software package for searching statistically overrepresented motifs (position specific weight matrices, PWMs) in a set of DNA sequences.

    C++ 10 3

  6. b-lore b-lore Public

    Bayesian multiple logistic regression for GWAS meta-analysis

    Python 16 1

Repositories

Showing 10 of 53 repositories
  • McDevol Public
    soedinglab/McDevol’s past year of commit activity
    Python 0 GPL-3.0 0 0 1 Updated Dec 18, 2024
  • spacedust Public

    Discovery of conserved gene clusters in multiple genomes

    soedinglab/spacedust’s past year of commit activity
    C 57 GPL-3.0 2 6 0 Updated Dec 17, 2024
  • soedinglab/binning_benchmarking’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 16, 2024
  • MMseqs2 Public

    MMseqs2: ultra fast and sensitive search and clustering suite

    soedinglab/MMseqs2’s past year of commit activity
    C 1,500 MIT 202 404 (2 issues need help) 10 Updated Dec 8, 2024
  • MMseqs2-App Public

    MMseqs2 app to run on your workstation or servers

    soedinglab/MMseqs2-App’s past year of commit activity
    Vue 67 GPL-3.0 20 10 10 Updated Dec 2, 2024
  • MMseqs2-Regression Public

    MMseqs2 Regression Testing

    soedinglab/MMseqs2-Regression’s past year of commit activity
    Shell 1 GPL-3.0 3 0 1 Updated Nov 22, 2024
  • transannot Public

    TransAnnot - a fast transcriptome annotation pipeline

    soedinglab/transannot’s past year of commit activity
    C 13 GPL-3.0 1 0 0 Updated Nov 15, 2024
  • hh-suite Public

    Remote protein homology detection suite.

    soedinglab/hh-suite’s past year of commit activity
    C 552 GPL-3.0 136 159 (1 issue needs help) 7 Updated Nov 8, 2024
  • plass Public

    sensitive and precise assembly of short sequencing reads

    soedinglab/plass’s past year of commit activity
    C 152 GPL-3.0 14 32 0 Updated Oct 11, 2024
  • WIsH Public

    Predict prokaryotic host for phage metagenomic sequences

    soedinglab/WIsH’s past year of commit activity
    C++ 52 GPL-3.0 10 2 0 Updated Sep 17, 2024

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