Releases · soedinglab/hh-suite

Breaking changes:

hhmake requires an output file with -o (-o stdout is also valid). Previously, omitting an output would truncate the stdout output to 1000 lines, possibly resulting in corrupted files
make install is now required to place all HH-suite binaries in one location
Dropped support for global .hhdefaults configuration file
Documentation has moved to our GitHub Wiki

Features:

Added hhsearch_omp, hhsearch_mpi, hhalign_omp and haling_mpi binaries
Added -maxseq parameter. HH-suite does not need to be recompiled anymore to change the (now gone) MAXSEQ constant
Removed HHLIB environment variable from most tools (some old Perl scripts might still try to read it)
FFindex is now part of the HH-suite, no more submodule calls are needed
Dockerfile and docker images under soedinglab/hh-suite
Removed non-GPLv3 compatible code
hhalign can align multiple template files. Thanks @al42and

Bugfixes:

The HH-suite does not require SSSE3 anymore, SSE2 is sufficient. (But AVX2 is preferred with up to 2x speedup)
HHblits and HHsearch don't produce empty alignments anymore
ffindex_apply_mpi will not crash anymore on systems with low amount of virtual memory
hhblits_omp no longer has a max thread limit (it will however eventually run into IO issues)
HHsearch does not mention prefiltering in its output anymore
All parallelized tools will read their databases linearly if possible
HH-suite compiles without issues on GCC 4.8 and Clang 3.6 again
OpenMP and MPI parallelized tools will not create stray .hhr files anymore

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