Update python-package-conda.yml #17

	name: McDevol

	on: [push]

	jobs:
	build-linux:
	runs-on: ubuntu-latest
	strategy:
	max-parallel: 5

	steps:
	- uses: actions/checkout@v4
	- name: Set up Python 3.9
	uses: actions/setup-python@v3
	with:
	python-version: '3.9'
	auto-update-conda: true
	channels: conda-forge,defaults,bioconda,nvidia,ursky
	use-mamba: false # Faster dependency solver
	- name: Add conda to system path
	run: \|
	# $CONDA is an environment variable pointing to the root of the miniconda directory
	echo $CONDA/bin >> $GITHUB_PATH
	sudo apt-get update
	# - name: Install NVIDIA CUDA Toolkit
	# run: \|
	# sudo apt-get install -y wget gnupg
	# wget https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/cuda-keyring_1.0-1_all.deb
	# sudo dpkg -i cuda-keyring_1.0-1_all.deb
	# sudo apt-get update
	# sudo apt-get install -y cuda-toolkit-11-0
	- name: Install dependencies
	run: \|
	conda env update --file environment.yml --name base
	- name: Verify CUDA Installation
	run: \|
	nvcc --version
	nvidia-smi
	- name: Lint with flake8
	run: \|
	conda install flake8
	# stop the build if there are Python syntax errors or undefined names
	flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
	- name: Test with pytest
	run: \|
	conda install pytest
	pytest

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