Fix warnings

soedinglab · Nov 13, 2024 · e6ff82c · e6ff82c
1 parent 776ac3b
commit e6ff82c
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Showing 3 changed files with 6 additions and 4 deletions.
diff --git a/src/commons/Sequence.cpp b/src/commons/Sequence.cpp
@@ -225,7 +225,6 @@ void Sequence::mapSequence(size_t id, unsigned int dbKey, const char *sequence,
 void Sequence::mapSequence(size_t id, unsigned int dbKey, std::pair<const unsigned char *,const unsigned int> data){
     this->id = id;
     this->dbKey = dbKey;
-    const int alphabetSize = subMat->alphabetSize;
     if (Parameters::isEqualDbtype(this->seqType, Parameters::DBTYPE_AMINO_ACIDS)
         || Parameters::isEqualDbtype( this->seqType,Parameters::DBTYPE_NUCLEOTIDES)){
         this->L = data.second;

diff --git a/src/commons/SubstitutionMatrix.cpp b/src/commons/SubstitutionMatrix.cpp
@@ -57,8 +57,12 @@ SubstitutionMatrix::SubstitutionMatrix(const char *filename, float bitFactor, fl
 }
 
 
-bool SubstitutionMatrix::estimateLambdaAndBackground(const double **scoreMatrix,
-                                                     int alphabetSize, double *pBack, double &lambda) {
+bool SubstitutionMatrix::estimateLambdaAndBackground(
+        const double** MAYBE_UNUSED(scoreMatrix),
+        int MAYBE_UNUSED(alphabetSize),
+        double* MAYBE_UNUSED(pBack),
+        double& MAYBE_UNUSED(lambda)
+    ) {
     Debug(Debug::ERROR) << "Custom Substitution Matrix not supported in the release. Please use previous release\n";
     return false;
     // We need to pass the parameters as 1-based pointers, hence the +1s and -1s.

diff --git a/src/test/TestUngappedCpuPerf.cpp b/src/test/TestUngappedCpuPerf.cpp
@@ -41,7 +41,6 @@ int main (int, const char**) {
         }
     }
 
-    size_t seqLen = 32;
     size_t targets = 5000000;
 
     std::vector<int> benchSizes = {
-Original file line number
+Diff line change
@@ Expand Up / @@ -41,7 +41,6 @@ int main (int, const char**) { @@
             }
         }
-        size_t seqLen = 32;
         size_t targets = 5000000;
         std::vector<int> benchSizes = {
@@ Expand Down @@