Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

perf: improve spia script and report #83

Merged
merged 9 commits into from
Jan 31, 2024
Merged

perf: improve spia script and report #83

merged 9 commits into from
Jan 31, 2024

Commits on Nov 16, 2023

  1. bring spia.R changes from gfold workflow here

    @dlaehnemann
    dlaehnemann committed Nov 16, 2023
    Configuration menu
    Copy the full SHA
    3843e0d View commit details
    Browse the repository at this point in the history

  2. reduce spia.R indentation to two spaces per level

    @dlaehnemann
    dlaehnemann committed Nov 16, 2023
    Configuration menu
    Copy the full SHA
    a0da328 View commit details
    Browse the repository at this point in the history

  3. remove activated and inhibited tables from spia reporting, as these a… 

    …re merely subsets of the main table without any further value added (contrary to previous variable naming, no sorting or anything happened in the creation of these tables)
    @dlaehnemann
    dlaehnemann committed Nov 16, 2023
    Configuration menu
    Copy the full SHA
    cd64c44 View commit details
    Browse the repository at this point in the history

  4. completely remove activated and inactivated tables from spia datavzrd… 

    … template
    @dlaehnemann
    dlaehnemann committed Nov 16, 2023
    Configuration menu
    Copy the full SHA
    a8d9b24 View commit details
    Browse the repository at this point in the history

  5. update/correct spia.rst for correct column names

    @dlaehnemann
    dlaehnemann committed Nov 16, 2023
    Configuration menu
    Copy the full SHA
    7110ffd View commit details
    Browse the repository at this point in the history

  6. bring in spia datavzrd template improvements from gfold workflow

    @dlaehnemann
    dlaehnemann committed Nov 16, 2023
    Configuration menu
    Copy the full SHA
    4afecce View commit details
    Browse the repository at this point in the history

  7. include new required params: pathway_db: in spia datavzrd templating … 

    …rule
    @dlaehnemann
    dlaehnemann committed Nov 16, 2023
    Configuration menu
    Copy the full SHA
    1cc9477 View commit details
    Browse the repository at this point in the history

  8. use latest version of datavzrd wrapper

    @dlaehnemann
    dlaehnemann committed Nov 16, 2023
    Configuration menu
    Copy the full SHA
    5537040 View commit details
    Browse the repository at this point in the history

Commits on Jan 30, 2024

  1. Merge branch 'main' into improve-spia

    @dlaehnemann
    dlaehnemann authored Jan 30, 2024
    Configuration menu
    Copy the full SHA
    1d2fdcb View commit details
    Browse the repository at this point in the history