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Now Mabs-flye is based on Flye 2.9.2 instead of Flye 2.9.1. This may increase the assembly quality.
Now Mabs-hifiasm is based on Hifiasm 0.19.3 instead of Hifiasm 0.16.1. This may increase the assembly quality.
The ability to use ultralong Nanopore reads has been recently added to Hifiasm. Mabs-hifiasm now can use them too, via a new option "--ultralong-nanopore-reads".
A new option "--additional_flye_parameters" has been added to Mabs-flye. A user can pass some Flye-specific parameters to Flye through it.
A new option "--additional_hifiasm_parameters" has been added to Mabs-hifiasm. A user can pass some Hifiasm-specific parameters to Hifiasm through it.