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2D U-Net HipMRI s46978116#183

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obbamna wants to merge 32 commits intoshakes76:topic-recognitionshakes76/PatternAnalysis-2024:topic-recognitionfrom obbamna:topic-recognitionobbamna/PatternAnalysis-2024:topic-recognitionCopy head branch name to clipboard

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Commits

Commits on Oct 29, 2024

• initial commit with required files and descriptions

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  ceb154c

Commits on Oct 30, 2024

• added 2d nifti file reader from appendix to dataset.py

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  d865ece

• added 2d Unet model to modules.py

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• added 2d Unet to modules.py

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• added dataset class for loading 2d slices

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• added training variables

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• added test for unet module

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• change dataset class to deal with mismatch in size

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• created training loop

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• redesign resizing in dataset.py

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• dimension resizing in dataset.py

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• diceloss function added to modules.py

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• restructure of training with plots of epochs and dice loss

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• new training restructure

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• changes to Unet to ensure number of channels are conserved when upsampling

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• minor changes to dataset.py to include transformations

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Commits on Oct 31, 2024

• added more plots and predictions to train.py

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• updated dataset slightly

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• change to unet structure, max layer is 256

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  e572460

• changed back conv layers to earlier version

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• changing hyperparameters and loss function

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• writing README report

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• predict script

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• comments and more pictures in training

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  4c35e4a

• finish readme

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  da5b576

• minor changes

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• minor changes, spelling etc.

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• savedmodels and images for report

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• comments

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• comments

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• comments

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  3d1359f

Commits on Nov 14, 2024

• removed model checkpoints

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