v0.2.1

Tagged to mark the state of code as used in the work here:
Johnson, Sean R., Xiaozhi Fu, Sandra Viknander, Clara Goldin, Sarah Monaco, Aleksej Zelezniak, and Kevin K. Yang. “Computational Scoring and Experimental Evaluation of Enzymes Generated by Neural Networks.” bioRxiv, March 4, 2023. https://doi.org/10.1101/2023.03.04.531015.

v0.2.0

Added commandline utilities and support for ESM-MSA, removed a bunch of code that was specific to the pre-print manuscript.

code for pre-print

Code in this release corresponds to codebase at the time of the release of version 1 of the preprint linked below.
https://www.biorxiv.org/content/10.1101/2021.01.26.428322v1