Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

updated multivi tutorials with mudata and minification #370

Open
wants to merge 3 commits into
base: main
Choose a base branch
from

Conversation

ori-kron-wis
Copy link
Contributor

@ori-kron-wis ori-kron-wis commented Nov 21, 2024

Formatting

  • My tutorial has only one top-level (#) header

Reproducibility

  • My tutorial works on Google Colab
  • My tutorial sets scvi.settings.seed = 0 at the beginning of the notebook
  • My tutorial has been run and includes outputs (e.g. plots, tables)

Other

  • Counts and normalized data should co-exist in the datasets, see the API overview for an example
  • For scRNA-seq data, normalization should be counts per median library size and then log1p transformed -- if not, a reason should be given

Copy link

Check out this pull request on  ReviewNB

See visual diffs & provide feedback on Jupyter Notebooks.


Powered by ReviewNB

@ori-kron-wis ori-kron-wis self-assigned this Nov 21, 2024
@ori-kron-wis ori-kron-wis added this to the scvi-tutorials 1.2.0 milestone Nov 21, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant