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@scverse

scverse

Foundational tools for omics data in the life sciences
README.md

Welcome to scverse!

scverse is a community that develops and maintains foundational tools for single-cell omics data analysis in primarily Python.

Here's how to get started:

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  1. scanpy scanpy Public

    Single-cell analysis in Python. Scales to >1M cells.

    Python 1.9k 603

  2. anndata anndata Public

    Annotated data.

    Python 578 154

  3. muon muon Public

    muon is a multimodal omics Python framework

    Python 218 31

  4. mudata mudata Public

    Multimodal Data (.h5mu) implementation for Python

    Python 78 17

  5. scvi-tools scvi-tools Public

    Deep probabilistic analysis of single-cell and spatial omics data

    Python 1.3k 353

  6. scirpy scirpy Public

    A scanpy extension to analyse single-cell TCR and BCR data.

    Python 220 34

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