Speed up clonotype distance calculation #495
Workflow file for this run
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| name: conda | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -e {0} # -e to fail on error | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - os: ubuntu-latest | |
| python: "3.12" | |
| env: | |
| OS: ${{ matrix.os }} | |
| PYTHON: ${{ matrix.python }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| channels: conda-forge,bioconda | |
| channel-priority: strict | |
| python-version: ${{ matrix.python-version }} | |
| - name: install conda build | |
| run: | | |
| mamba install -y boa conda-verify | |
| shell: bash | |
| - name: build and test package | |
| run: | | |
| cd .conda | |
| conda mambabuild --no-anaconda-upload . | |
| shell: bash |