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Add two distance metrics, three-way comparison and bootstrapping #608

Merged
merged 36 commits into from
Jun 24, 2024
Merged

Add two distance metrics, three-way comparison and bootstrapping #608

merged 36 commits into from
Jun 24, 2024

Commits on May 26, 2024

  1. add two distance metrics

    @wxicu
    wxicu committed May 26, 2024
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  2. add obsm_key param to distance test

    @wxicu
    wxicu committed May 26, 2024
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  3. [pre-commit.ci] auto fixes from pre-commit.com hooks 

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    pre-commit-ci[bot] committed May 26, 2024
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Commits on Jun 2, 2024

  1. add agg fct

    @wxicu
    wxicu committed Jun 2, 2024
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Commits on Jun 3, 2024

  1. speed up tests

    @wxicu
    wxicu committed Jun 3, 2024
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  2. Merge branch 'main' into distance

    @wxicu
    wxicu authored Jun 3, 2024
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  3. add type

    @wxicu
    wxicu committed Jun 3, 2024
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  4. add description

    @wxicu
    wxicu committed Jun 3, 2024
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Commits on Jun 5, 2024

  1. Update pertpy/tools/_distances/_distances.py 

    Co-authored-by: Lukas Heumos <[email protected]>
    @wxicu @Zethson
    wxicu and Zethson authored Jun 5, 2024
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  2. [pre-commit.ci] auto fixes from pre-commit.com hooks 

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  3. Update pertpy/tools/_distances/_distances.py 

    Co-authored-by: Lukas Heumos <[email protected]>
    @wxicu @Zethson
    wxicu and Zethson authored Jun 5, 2024
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  4. Update pertpy/tools/_distances/_distances.py 

    Co-authored-by: Lukas Heumos <[email protected]>
    @wxicu @Zethson
    wxicu and Zethson authored Jun 5, 2024
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  5. Update pertpy/tools/_distances/_distances.py 

    Co-authored-by: Eljas Roellin <[email protected]>
    @wxicu @eroell
    wxicu and eroell authored Jun 5, 2024
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  6. Update pertpy/tools/_distances/_distances.py 

    Co-authored-by: Eljas Roellin <[email protected]>
    @wxicu @eroell
    wxicu and eroell authored Jun 5, 2024
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  7. Update pertpy/tools/_distances/_distances.py 

    Co-authored-by: Eljas Roellin <[email protected]>
    @wxicu @eroell
    wxicu and eroell authored Jun 5, 2024
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  8. Update pertpy/tools/_distances/_distances.py 

    Co-authored-by: Eljas Roellin <[email protected]>
    @wxicu @eroell
    wxicu and eroell authored Jun 5, 2024
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Commits on Jun 6, 2024

  1. update code

    @wxicu
    wxicu committed Jun 6, 2024
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  2. [pre-commit.ci] auto fixes from pre-commit.com hooks 

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  3. fix drug

    @wxicu
    wxicu committed Jun 6, 2024
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  4. [pre-commit.ci] auto fixes from pre-commit.com hooks 

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Commits on Jun 7, 2024

  1. add bootstrapping and metrics_3g

    @wxicu
    wxicu committed Jun 7, 2024
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  2. speed up tests,

    @wxicu
    wxicu committed Jun 7, 2024
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Commits on Jun 10, 2024

  1. remove test classes

    @wxicu
    wxicu committed Jun 10, 2024
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  2. drop test classes

    @wxicu
    wxicu committed Jun 10, 2024
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Commits on Jun 12, 2024

  1. update compare_de

    @wxicu
    wxicu committed Jun 12, 2024
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  2. correct the comments

    @wxicu
    wxicu committed Jun 12, 2024
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Commits on Jun 13, 2024

  1. speed tests

    @wxicu
    wxicu committed Jun 13, 2024
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  2. speed up tests

    @wxicu
    wxicu committed Jun 13, 2024
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Commits on Jun 18, 2024

  1. split metrics_3g

    @wxicu
    wxicu committed Jun 18, 2024
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  2. fix pre-commit

    @wxicu
    wxicu committed Jun 18, 2024
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Commits on Jun 19, 2024

  1. pin numpy <2

    @wxicu
    wxicu committed Jun 19, 2024
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Commits on Jun 20, 2024

  1. unpin numpy

    @wxicu
    wxicu committed Jun 20, 2024
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  2. speed up mahalanobis distance

    @wxicu
    wxicu committed Jun 20, 2024
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  3. use scipy to calculate mahalanobis distance

    @wxicu
    wxicu committed Jun 20, 2024
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Commits on Jun 23, 2024

  1. rename DGE to DGEEVAL

    @wxicu
    wxicu committed Jun 23, 2024
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  2. Merge branch 'main' into distance

    @wxicu
    wxicu authored Jun 23, 2024
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