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Fix access to raw.X by .raw.{obs,var}_vector #178

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merged 1 commit into from
Jul 8, 2019
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Fix access to raw.X by .raw.{obs,var}_vector #178

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6 changes: 4 additions & 2 deletions anndata/core/anndata.py
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Original file line number Diff line number Diff line change
Expand Up @@ -385,7 +385,8 @@ def var_vector(self, k: str) -> np.ndarray:
if k in self.var:
return self.var[k].values
else:
a = self[k, :].X
idx = self._normalize_indices((k, slice(None)))
a = self.X[idx]
if issparse(a):
a = a.toarray()
return np.ravel(a)
Expand All @@ -409,7 +410,8 @@ def obs_vector(self, k: str) -> np.ndarray:
A one dimensional nd array, with values for each obs in the same order
as `.obs_names`.
"""
a = self[:, k].X
idx = self._normalize_indices((slice(None), k))
a = self.X[idx]
if issparse(a):
a = a.toarray()
return np.ravel(a)
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