Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

(feat): read_lazy for whole AnnData lazy-loading + xarray reading + read_elem_as_dask -> read_elem_lazy #1247

Open
wants to merge 409 commits into
base: main
Choose a base branch
from

Merge branch 'main' into ig/xarray_compat

97aff04
Select commit
Loading
Failed to load commit list.
Open

(feat): read_lazy for whole AnnData lazy-loading + xarray reading + read_elem_as_dask -> read_elem_lazy #1247

Merge branch 'main' into ig/xarray_compat
97aff04
Select commit
Loading
Failed to load commit list.
Codecov / codecov/patch succeeded Sep 18, 2024 in 1s

88.81% of diff hit (target 86.87%)

View this Pull Request on Codecov

88.81% of diff hit (target 86.87%)

Annotations

Check warning on line 27 in src/anndata/_core/aligned_df.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/_core/aligned_df.py#L27 

Added line #L27 was not covered by tests

Check warning on line 114 in src/anndata/_core/index.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/_core/index.py#L114 

Added line #L114 was not covered by tests

Check warning on line 31 in src/anndata/_core/storage.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/_core/storage.py#L31 

Added line #L31 was not covered by tests

Check warning on line 36 in src/anndata/_core/storage.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/_core/storage.py#L33-L36 

Added lines #L33 - L36 were not covered by tests

Check warning on line 144 in src/anndata/_io/specs/lazy_methods.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/_io/specs/lazy_methods.py#L144 

Added line #L144 was not covered by tests

Check warning on line 146 in src/anndata/_io/specs/lazy_methods.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/_io/specs/lazy_methods.py#L146 

Added line #L146 was not covered by tests

Check warning on line 148 in src/anndata/_io/specs/lazy_methods.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/_io/specs/lazy_methods.py#L148 

Added line #L148 was not covered by tests

Check warning on line 217 in src/anndata/_io/specs/lazy_methods.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/_io/specs/lazy_methods.py#L217 

Added line #L217 was not covered by tests

Check warning on line 9 in src/anndata/experimental/backed/_compat.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_compat.py#L9 

Added line #L9 was not covered by tests

Check warning on line 24 in src/anndata/experimental/backed/_compat.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_compat.py#L24 

Added line #L24 was not covered by tests

Check warning on line 33 in src/anndata/experimental/backed/_compat.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_compat.py#L33 

Added line #L33 was not covered by tests

Check warning on line 42 in src/anndata/experimental/backed/_compat.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_compat.py#L42 

Added line #L42 was not covered by tests

Check warning on line 56 in src/anndata/experimental/backed/_io.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_io.py#L55-L56 

Added lines #L55 - L56 were not covered by tests

Check warning on line 58 in src/anndata/experimental/backed/_io.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_io.py#L58 

Added line #L58 was not covered by tests

Check warning on line 79 in src/anndata/experimental/backed/_io.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_io.py#L79 

Added line #L79 was not covered by tests

Check warning on line 28 in src/anndata/experimental/backed/_lazy_arrays.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_lazy_arrays.py#L26-L28 

Added lines #L26 - L28 were not covered by tests

Check warning on line 35 in src/anndata/experimental/backed/_lazy_arrays.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_lazy_arrays.py#L35 

Added line #L35 was not covered by tests

Check warning on line 62 in src/anndata/experimental/backed/_lazy_arrays.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_lazy_arrays.py#L62 

Added line #L62 was not covered by tests

Check warning on line 64 in src/anndata/experimental/backed/_lazy_arrays.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_lazy_arrays.py#L64 

Added line #L64 was not covered by tests

Check warning on line 108 in src/anndata/experimental/backed/_lazy_arrays.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_lazy_arrays.py#L108 

Added line #L108 was not covered by tests

Check warning on line 113 in src/anndata/experimental/backed/_lazy_arrays.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_lazy_arrays.py#L113 

Added line #L113 was not covered by tests

Check warning on line 118 in src/anndata/experimental/backed/_lazy_arrays.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_lazy_arrays.py#L118 

Added line #L118 was not covered by tests

Check warning on line 1063 in src/anndata/tests/helpers.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/tests/helpers.py#L1063 

Added line #L1063 was not covered by tests

Check warning on line 1069 in src/anndata/tests/helpers.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/tests/helpers.py#L1067-L1069 

Added lines #L1067 - L1069 were not covered by tests

Check warning on line 1073 in src/anndata/tests/helpers.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/tests/helpers.py#L1073 

Added line #L1073 was not covered by tests
View more details on Codecov