Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

(feat): read_lazy for whole AnnData lazy-loading + xarray reading + read_elem_as_dask -> read_elem_lazy #1247

Open
wants to merge 409 commits into
base: main
Choose a base branch
from

Merge branch 'main' into ig/xarray_compat

e0e8891
Select commit
Loading
Failed to load commit list.
Open

(feat): read_lazy for whole AnnData lazy-loading + xarray reading + read_elem_as_dask -> read_elem_lazy #1247

Merge branch 'main' into ig/xarray_compat
e0e8891
Select commit
Loading
Failed to load commit list.
Codecov / codecov/patch succeeded Aug 26, 2024 in 0s

90.50% of diff hit (target 86.70%)

View this Pull Request on Codecov

90.50% of diff hit (target 86.70%)

Annotations

Check warning on line 27 in src/anndata/_core/aligned_df.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/_core/aligned_df.py#L27

Added line #L27 was not covered by tests

Check warning on line 99 in src/anndata/_core/anndata.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/_core/anndata.py#L99

Added line #L99 was not covered by tests

Check warning on line 78 in src/anndata/_core/storage.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/_core/storage.py#L78

Added line #L78 was not covered by tests

Check warning on line 83 in src/anndata/_core/storage.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/_core/storage.py#L80-L83

Added lines #L80 - L83 were not covered by tests

Check warning on line 228 in src/anndata/_io/specs/lazy_methods.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/_io/specs/lazy_methods.py#L228

Added line #L228 was not covered by tests

Check warning on line 9 in src/anndata/experimental/backed/_compat.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_compat.py#L9

Added line #L9 was not covered by tests

Check warning on line 24 in src/anndata/experimental/backed/_compat.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_compat.py#L24

Added line #L24 was not covered by tests

Check warning on line 33 in src/anndata/experimental/backed/_compat.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_compat.py#L33

Added line #L33 was not covered by tests

Check warning on line 42 in src/anndata/experimental/backed/_compat.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_compat.py#L42

Added line #L42 was not covered by tests

Check warning on line 78 in src/anndata/experimental/backed/_io.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_io.py#L78

Added line #L78 was not covered by tests

Check warning on line 54 in src/anndata/experimental/backed/_lazy_arrays.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_lazy_arrays.py#L54

Added line #L54 was not covered by tests

Check warning on line 59 in src/anndata/experimental/backed/_lazy_arrays.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_lazy_arrays.py#L58-L59

Added lines #L58 - L59 were not covered by tests

Check warning on line 62 in src/anndata/experimental/backed/_lazy_arrays.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_lazy_arrays.py#L62

Added line #L62 was not covered by tests

Check warning on line 65 in src/anndata/experimental/backed/_lazy_arrays.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_lazy_arrays.py#L65

Added line #L65 was not covered by tests

Check warning on line 68 in src/anndata/experimental/backed/_lazy_arrays.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_lazy_arrays.py#L68

Added line #L68 was not covered by tests

Check warning on line 71 in src/anndata/experimental/backed/_lazy_arrays.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_lazy_arrays.py#L71

Added line #L71 was not covered by tests

Check warning on line 116 in src/anndata/experimental/backed/_lazy_arrays.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_lazy_arrays.py#L116

Added line #L116 was not covered by tests

Check warning on line 145 in src/anndata/experimental/backed/_lazy_arrays.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_lazy_arrays.py#L145

Added line #L145 was not covered by tests

Check warning on line 150 in src/anndata/experimental/backed/_lazy_arrays.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_lazy_arrays.py#L150

Added line #L150 was not covered by tests

Check warning on line 155 in src/anndata/experimental/backed/_lazy_arrays.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_lazy_arrays.py#L155

Added line #L155 was not covered by tests

Check warning on line 79 in src/anndata/experimental/backed/_xarray.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/experimental/backed/_xarray.py#L79

Added line #L79 was not covered by tests

Check warning on line 989 in src/anndata/tests/helpers.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/tests/helpers.py#L989

Added line #L989 was not covered by tests

Check warning on line 995 in src/anndata/tests/helpers.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/tests/helpers.py#L993-L995

Added lines #L993 - L995 were not covered by tests

Check warning on line 999 in src/anndata/tests/helpers.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/anndata/tests/helpers.py#L999

Added line #L999 was not covered by tests