(chore): remove anndata.read
#2539
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| name: Benchmark | |
| on: | |
| push: | |
| branches: [main, "[0-9]+.[0-9]+.x"] | |
| pull_request: | |
| branches: [main] | |
| jobs: | |
| benchmark: | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -el {0} # -e to fail on error, -l for mamba | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python: ["3.12"] | |
| os: [ubuntu-latest] | |
| env: | |
| OS: ${{ matrix.os }} | |
| PYTHON: ${{ matrix.python }} | |
| ASV_DIR: "./benchmarks" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - run: git fetch origin main:main | |
| if: ${{ github.ref_name != 'main' }} | |
| # Errors on main branch | |
| - uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| environment-name: asv | |
| cache-environment: true | |
| # Deps documented in https://asv.readthedocs.io/en/latest/installing.html | |
| # libmambapy upper bound: https://github.com/airspeed-velocity/asv/issues/1438 | |
| create-args: >- | |
| python=${{ matrix.python }} | |
| asv | |
| libmambapy<2 | |
| conda-build | |
| - name: Cache datasets | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| ~/.cache | |
| key: benchmark-state-${{ hashFiles('benchmarks/**') }} | |
| - name: Quick benchmark run | |
| working-directory: ${{ env.ASV_DIR }} | |
| run: | | |
| asv machine --yes | |
| asv run --quick --show-stderr --verbose |