refactor build into reusable workflow #1
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| # This workflow will use the build action to build the msyd python package, and call the CLI interface to check the install worked | |
| name: Test build | |
| on: | |
| push: | |
| branches: [ "main", "dev" ] | |
| pull_request: | |
| branches: [ "main", "dev" ] | |
| # Cancel if a newer run is started | |
| # taken from https://github.com/nf-core/modules/blob/master/.github/workflows/nf-test.yml | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10", "3.11", "3.12", "3.13"] | |
| steps: | |
| - name: Build msyd | |
| uses: ./.github/workflows/build.yml | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Test installation | |
| run: | | |
| msyd --version | |
| msyd -h | |
| msyd call -h | |
| msyd view -h | |
| - name: Test example_run.sh | |
| run: | | |
| # alias to a call launching the syri entrypoint from python | |
| # necessary, as the hacky git install does not install the CLI entrypoints | |
| alias syri='python <(echo "import syri.scripts.syri;syri.scripts.syri.main()")' | |
| ./example/example_workflow.sh |