test_build.yml

# This workflow will use the build action to build the msyd python package, and call the CLI interface to check the install worked
name: Test build

on:
  push:
    branches: [ "main", "dev" ]
  pull_request:
    branches: [ "main", "dev" ]

# Cancel if a newer run is started
# taken from https://github.com/nf-core/modules/blob/master/.github/workflows/nf-test.yml
concurrency:
  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
  cancel-in-progress: true


jobs:
  test:
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12", "3.13"]
    steps:
      - name: Build msyd
        uses: ./.github/workflows/build.yml
        with:
          python-version: ${{ matrix.python-version }}
      - name: Test installation
        run: |
          msyd --version
          msyd -h
          msyd call -h
          msyd view -h
      - name: Test example_run.sh
        run: |
          # alias to a call launching the syri entrypoint from python
          # necessary, as the hacky git install does not install the CLI entrypoints
          alias syri='python <(echo "import syri.scripts.syri;syri.scripts.syri.main()")'
          ./example/example_workflow.sh