Skip to content
@sc-eQTLgen-consortium

sc-eQTLgen-consortium

Popular repositories Loading

  1. WG1-pipeline-QC WG1-pipeline-QC Public

    Part of the sc-eQTLgen consortium pipeline. Step 1, where the QC is done.

    Python 7 6

  2. li-2023 li-2023 Public

    Building Gene Regulatory Networks in scRNA-seq data

    Jupyter Notebook 5 1

  3. WG2-pipeline-classification WG2-pipeline-classification Public

    Part of the sc-eQTLgen consortium pipeline. Step 2, where the cell-type classification is done.

    R 2 1

  4. co-expressionQTLs co-expressionQTLs Public

    Forked from shuang1330/single_cell

    Building Gene Regulatory Networks in scRNA-seq data

    Jupyter Notebook 2

  5. WG3-pipeline-QTL WG3-pipeline-QTL Public

    Part of the sc-eQTLgen consortium pipeline. Step 3, where the QTL mapping is done.

    R 3

  6. souporcell souporcell Public

    Forked from wheaton5/souporcell

    Clustering scRNAseq by genotypes

    Python

Repositories

Showing 10 of 12 repositories
  • WG1-pipeline-QC Public

    Part of the sc-eQTLgen consortium pipeline. Step 1, where the QC is done.

    sc-eQTLgen-consortium/WG1-pipeline-QC’s past year of commit activity
    Python 7 6 9 1 Updated Dec 11, 2024
  • WG3-pipeline-QTL Public

    Part of the sc-eQTLgen consortium pipeline. Step 3, where the QTL mapping is done.

    sc-eQTLgen-consortium/WG3-pipeline-QTL’s past year of commit activity
    R 0 3 0 0 Updated Dec 11, 2024
  • WG2-pipeline-classification Public

    Part of the sc-eQTLgen consortium pipeline. Step 2, where the cell-type classification is done.

    sc-eQTLgen-consortium/WG2-pipeline-classification’s past year of commit activity
    R 2 1 1 0 Updated Dec 11, 2024
  • WG0-pipeline-preprocessing Public

    Future addition to the sc-eQTLgen consortium pipeline. Step 0, where alignment and ambient RNA correction is done.

    sc-eQTLgen-consortium/WG0-pipeline-preprocessing’s past year of commit activity
    0 0 0 0 Updated Dec 11, 2024
  • co-eQTL-meta-analysis Public

    Collection of files and scripts for co-eQTL project using meta-analysis approach with the single-cell eQTLGen consortium

    sc-eQTLgen-consortium/co-eQTL-meta-analysis’s past year of commit activity
    R 0 0 0 0 Updated Dec 8, 2024
  • WG-pipeline-docs Public

    Documentation website for the different workgroup pipelines

    sc-eQTLgen-consortium/WG-pipeline-docs’s past year of commit activity
    0 0 0 0 Updated Oct 15, 2024
  • limix_qtl Public Forked from single-cell-genetics/limix_qtl
    sc-eQTLgen-consortium/limix_qtl’s past year of commit activity
    Python 0 Apache-2.0 16 0 0 Updated Jun 26, 2024
  • li-2023 Public

    Building Gene Regulatory Networks in scRNA-seq data

    sc-eQTLgen-consortium/li-2023’s past year of commit activity
    Jupyter Notebook 5 BSD-2-Clause 1 0 0 Updated Jan 11, 2024
  • wg3-sc_pseudobulk_DEA Public Forked from aidarripoll/wg3-sc_pseudobulk_DEA

    sc-eQTLGen Consortium WG3: single cell- and pseudobulk-DEA

    sc-eQTLgen-consortium/wg3-sc_pseudobulk_DEA’s past year of commit activity
    R 0 1 0 0 Updated Dec 18, 2023
  • wg3_cell_qc_filtering Public Forked from aidarripoll/wg1-qc_filtering

    Cell QC filtering WG3

    sc-eQTLgen-consortium/wg3_cell_qc_filtering’s past year of commit activity
    R 0 1 0 0 Updated Dec 13, 2023
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Most used topics

Loading…