Flatfield visualization and application #188
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This reverts commit ef55898. The filter is not used since this should not be done dynamically.
trautmane
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Apr 25, 2024
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This reverts commit c1284f8. The extracted substring is not only the sfov number but also includes the scan and mfov numbers
trautmane
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Apr 29, 2024
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I added some code to visualize flat field estimates and apply them to the wafer_53 images.
There are two new clients:
FlatfieldVisualizationClientcreates a stack that shows all flat field estimates on a regular hexagonal grid (there is one flat field estimate per z-layer and per sfov, making one mfov column in total);MultiSemFlatFieldCorrectionClientre-saves all source images of a collection of stacks and creates new stacks that point to the re-saved images.For now, the flat field estimates are created externally, but the plan is to port this to render at a later time.