Improve logging and slightly change parameters

saalfeldlab · Aug 9, 2024 · a7cffee · a7cffee
1 parent 477c4c8
commit a7cffee
Show file tree

Hide file tree

Showing 2 changed files with 8 additions and 6 deletions.
diff --git a/render-ws-java-client/src/main/java/org/janelia/render/client/StreakStatisticsClient.java b/render-ws-java-client/src/main/java/org/janelia/render/client/StreakStatisticsClient.java
@@ -98,6 +98,7 @@ public StreakStatisticsClient(final Parameters parameters) {
 
 	public void computeStreakStatistics() throws IOException {
 		for (final Integer zValue : parameters.zValues) {
+			LOG.info("Computing statistics for zValue={}", zValue);
 			computeStreakStatisticsForZValue(zValue);
 		}
 	}
@@ -110,7 +111,7 @@ private void computeStreakStatisticsForZValue(final int zValue) throws IOExcepti
 
 		rtsc.recalculateBoundingBoxes();
 		final Bounds regionBounds = rtsc.toBounds();
-		LOG.info("Region bounds={}", regionBounds);
+		LOG.debug("Region bounds={}", regionBounds);
 		final int statisticsWidth = regionBounds.getHeight();
 
 		// Accumulate pixel values for each tile in a global coordinate system orthogonal to streaks with averaging in z
@@ -126,10 +127,11 @@ private void computeStreakStatisticsForZValue(final int zValue) throws IOExcepti
 			final ImageProcessor processor = streakMask.getProcessor();
 
 			if (parameters.maskStorageLocation != null) {
+				LOG.info("Storing mask in directory '{}'", parameters.maskStorageLocation);
 				storeMask(zValue, tileSpec, streakMask);
 			}
 
-			LOG.info("tile bounds={}", tileSpec.toTileBounds());
+			LOG.debug("Record statistics with tile bounds={}", tileSpec.toTileBounds());
 			final IntRange recordingRange = getRecordingRange(tileSpec.toTileBounds(), regionBounds, tileSpec.getHeight());
 			recordPixelValues(processor, recordingRange, pixelwiseSum, pixelwiseCount);
 		}

diff --git a/render-ws-java-client/src/test/java/org/janelia/render/client/StreakStatisticsTest.java b/render-ws-java-client/src/test/java/org/janelia/render/client/StreakStatisticsTest.java
@@ -7,10 +7,10 @@ public static void main(final String[] args) {
 				"--owner", "cellmap",
 				"--project", "jrc_atla52_b10_2",
 				"--stack", "v1_acquire_align",
-				"--zValues", "1000",
-				"--context", "5",
-				"--outputFileFormat", "streak_statistics_z%d.csv",
-				"--maskStorageLocation", "masks",
+				"--zValues", "10,100,1000",
+				"--context", "3",
+				"--outputFileFormat", "streak_statistics_z%05d.csv",
+//				"--maskStorageLocation", "masks",
 				"--meanFilterSize", "201",
 				"--threshold", "10.0",
 				"--blurRadius", "3"