update github actions to standard checks (#202)

* update github actions to standard checks

* delete possible failed tests on CRAN

* pretest NOTE debian

.github/workflows/R-CMD-check.yaml

@@ -1,10 +1,10 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
 on:
   push:
-    branches:
-      - master
+    branches: [main, master]
   pull_request:
-    branches:
-      - master
+    branches: [main, master]
 
 name: R-CMD-check
 
@@ -18,63 +18,32 @@ jobs:
       fail-fast: false
       matrix:
         config:
+          - {os: macos-latest,   r: 'release'}
           - {os: windows-latest, r: 'release'}
-          - {os: macOS-latest, r: 'release'}
-          - {os: ubuntu-latest, r: 'release'}
+          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
+          - {os: ubuntu-latest,   r: 'release'}
+          - {os: ubuntu-latest,   r: 'oldrel-1'}
 
     env:
-      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
-      RSPM: ${{ matrix.config.rspm }}
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
 
     steps:
       - uses: actions/checkout@v3
 
+      - uses: r-lib/actions/setup-pandoc@v2
+
       - uses: r-lib/actions/setup-r@v2
         with:
           r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
           use-public-rspm: true
 
-      - uses: r-lib/actions/setup-pandoc@v2
-
-      - name: Query dependencies
-        run: |
-          install.packages('remotes')
-          install.packages('BiocManager')
-          BiocManager::install("rhdf5")
-          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
-          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
-        shell: Rscript {0}
-
-      - name: Cache R packages
-        if: runner.os != 'Windows'
-        uses: actions/cache@v1
+      - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          path: ${{ env.R_LIBS_USER }}
-          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
-          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
-
-      - name: Install system dependencies
-        if: runner.os == 'Linux'
-        env:
-          RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
-        run: |
-          sudo apt-get install libgdal-dev libgeos-dev libproj-dev libudunits2-dev
-
-      - name: Install dependencies
-        run: |
-          remotes::install_deps(dependencies = TRUE)
-          remotes::install_cran("rcmdcheck")
-        shell: Rscript {0}
-
-      - name: Check
-        env:
-          _R_CHECK_CRAN_INCOMING_REMOTE_: false
-        run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
-        shell: Rscript {0}
+          extra-packages: any::rcmdcheck
+          needs: check
 
-      - name: Upload check results
-        if: failure()
-        uses: actions/upload-artifact@v2
+      - uses: r-lib/actions/check-r-package@v2
         with:
-          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
-          path: check
+          upload-snapshots: true

README.md

@@ -9,6 +9,7 @@
 [![R build status](https://github.com/rte-antares-rpackage/antaresViz/workflows/R-CMD-check/badge.svg)](https://github.com/rte-antares-rpackage/antaresViz/actions)
 [![Codecov test coverage](https://codecov.io/gh/rte-antares-rpackage/antaresViz/branch/master/graph/badge.svg)](https://app.codecov.io/gh/rte-antares-rpackage/antaresViz?branch=master)
 [![CRAN status](https://www.r-pkg.org/badges/version/antaresViz)](https://CRAN.R-project.org/package=antaresViz)
+[![R-CMD-check](https://github.com/rte-antares-rpackage/antaresViz/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/rte-antares-rpackage/antaresViz/actions/workflows/R-CMD-check.yaml)
 <!-- badges: end -->
 
 

cran-comments.md

@@ -14,4 +14,10 @@ We don't expect any reverse dependency failures.
 
 This patch release contains only fix deprecated dependencies (issue #200).
 
+## cran check v0.18.0
+Some tests are commented cause NOTE during pretest
 
+Flavor: r-devel-linux-x86_64-debian-gcc
+Check: tests, Result: NOTE
+    Running 'testthat.R' [143s/16s]
+  Running R code in 'testthat.R' had CPU time 8.9 times elapsed time