Code

new stable release (v1.0.20241208)#896

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Merged

neurolabusc merged 105 commits intomasterrordenlab/dcm2niix:masterfrom developmentrordenlab/dcm2niix:developmentCopy head branch name to clipboardDec 8, 2024

+12,593-10,390

Commits

Commits on Dec 22, 2023

• issue 769: relax the check for bvec components > 1 a bit.

  

  Robert Reid

  committed
  029275f

Commits on Feb 17, 2024

• Merge branch 'development' of https://github.com/rordenlab/dcm2niix into development

  

  Robert Reid

  committed
  ac8a646

Commits on Feb 22, 2024

• GE UHP/7T Diffusion SliceTiming (#796)

  

  Jaemin Shin

  authored and

  Jaemin Shin

  committed
  987fdfb

• Merge pull request #798 from mr-jaemin/development

  Show description for 66f6427
  mr-jaemin

  authored
  66f6427

Commits on Feb 28, 2024

• DCM2NIIXFSLIB changes

  Show description for 79bcd4c
  yhuang43

  committed
  79bcd4c

• Merge pull request #800 from yhuang43/development

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  neurolabusc

  authored
  bca228c

Commits on Mar 1, 2024

• Philips renaming (#795)

  neurolabusc

  committed
  cb60b43

Commits on Mar 2, 2024

• Merge branch 'development' of https://github.com/rordenlab/dcm2niix into development

  

  Robert Reid

  committed
  e7aaa1b

Commits on Mar 11, 2024

• PET BIDS (#802)

  neurolabusc

  committed
  c975d1f

• codespell

  neurolabusc

  committed
  cc7d7f3

• more PET support (#802)

  neurolabusc

  committed
  f8baa94

Commits on Mar 13, 2024

• GE UHP/7T Diffusion SliceTiming Update (#796)

  mr-jaemin

  committed
  e5256f8

Commits on Mar 14, 2024

• GE UHP/7T Diffusion SliceTiming Update2

  mr-jaemin

  committed
  8becfeb

• Renambed ASL fields to match new BIDS specification (https://bids-specification.readthedocs.io/en/stable/glossary.html#labelingpulseflipangle-metadata)

  neurolabusc

  committed
  484de5b

• Merge branch 'rordenlab:development' into development

  mr-jaemin

  authored
  11b64e3

• Merge pull request #805 from mr-jaemin/development

  Show description for 856d032
  mr-jaemin

  authored
  856d032

Commits on Mar 15, 2024

• Restore PR modifications (484de5b)

  neurolabusc

  committed
  1858e1c

• ASL BIDS suggestions from @jan-petr

  neurolabusc

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  04d6d49

• Another suggestion from @jan-petr

  neurolabusc

  committed
  d635970

Commits on Mar 21, 2024

• Experimental start for reproin support

  neurolabusc

  committed
  1b4505e

Commits on Mar 25, 2024

• Unlatch 0400,0561 based on nesting depth (#807)

  neurolabusc

  committed
  550b9e2

Commits on Mar 28, 2024

• GE AcquisitionDuration (#808)

  

  Jaemin Shin

  authored and

  Jaemin Shin

  committed
  b256504

Commits on Mar 29, 2024

• GE AcquisitionDuration minor (#808)

  

  Jaemin Shin

  authored and

  Jaemin Shin

  committed
  608f636

• Merge pull request #810 from mr-jaemin/development

  Show description for ae1cb29
  neurolabusc

  authored
  ae1cb29

Commits on Apr 17, 2024

• Add DeidentificationMethod and DeidentificationMethodCodeSequence to json

  CGSchwarzMayo

  committed
  eba090b

Commits on Apr 18, 2024

• Merge branch 'development' of https://github.com/rordenlab/dcm2niix into development

  

  Robert Reid

  committed
  d17927e

• Disable XA partial vol detection for single slice files (#742)

  

  Robert Reid

  committed
  70abd5e

Commits on Apr 20, 2024

• Fix CSA n_tags check (#633)

  

  Robert Reid

  committed
  d53a237

Commits on Apr 25, 2024

• Merge branch 'rordenlab:master' into DeIdentificationMethod_json

  CGSchwarzMayo

  authored
  dd56f9a

• More robust detection of whether tags are inside DeidentificationMethodCodeSequence

  CGSchwarzMayo

  committed
  ed3f8a5

Commits on May 23, 2024

• Merge pull request #814 from captainnova/development

  Show description for f9ad69e
  neurolabusc

  authored
  f9ad69e

• Update issue templates

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  neurolabusc

  authored and

  tomhampshire

  committed
  772d8ad

• Console script return status code (#811)

  tomhampshire

  committed
  70007b6

Commits on May 31, 2024

• add MAGNITUDE to ImageType for GE data, necessary for heudiconv logic

  bpinsard

  committed
  08aeeef

Commits on Jul 3, 2024

• CI: PyPI release

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  casperdcl

  committed
  a7ed66c

Commits on Jul 24, 2024

• Merge pull request #824 from tomhampshire/main-exit-code

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  neurolabusc

  authored
  299aac0

• Merge pull request #826 from UNFmontreal/fix/ge_magnitude

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  neurolabusc

  authored
  6978699

• Merge pull request #833 from casperdcl/pypi-release

  Show description for e73095c
  neurolabusc

  authored
  e73095c

• GE slice timing (#838)

  neurolabusc

  committed
  cd7e481

• UIH DWI (#836)

  neurolabusc

  committed
  0001daa

Commits on Jul 25, 2024

• myNoRois option to ignore ROIs (#832)

  neurolabusc

  committed
  25ce4d0

• minBvalThreshold (#827)

  neurolabusc

  committed
  720ba60

• Siemens instance number re-use (#837)

  neurolabusc

  committed
  1eab724

• Specific for Siemens

  neurolabusc

  committed
  e039cb3

• TablePosition (#726)

  neurolabusc

  committed
  446419e

Commits on Jul 26, 2024

• GE TablePosition (#726)

  neurolabusc

  committed
  eb1eb11

• codespell:disable does not seem to work

  neurolabusc

  committed
  041310e

Commits on Jul 30, 2024

• Bruker kludge (#839)

  neurolabusc

  committed
  7d62584

Commits on Jul 31, 2024

• Fix corrupted raw nrrd file output on Windows

  Show description for fe4021d
  lassoan

  authored
  fe4021d

Commits on Aug 4, 2024

• Merge pull request #843 from lassoan/patch-2

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  neurolabusc

  authored
  15dacce

Commits on Aug 11, 2024

• TablePosition (#726)

  neurolabusc

  committed
  6a01168

• Siemens version details (#848)

  neurolabusc

  committed
  ba03669

Commits on Aug 12, 2024

• GE TablePosition tableDelta

  

  Jaemin Shin

  authored and

  Jaemin Shin

  committed
  d675aef

Commits on Aug 13, 2024

• Do not report PhaseEncodingDirection for 3D sequences (#849)

  neurolabusc

  committed
  7440121

• Merge pull request #850 from mr-jaemin/development

  Show description for 0ff9d32
  neurolabusc

  authored
  0ff9d32

• Revese polarity of Philips/Siemens TablePos Z (#726)

  neurolabusc

  committed
  de3b205

Commits on Aug 14, 2024

• Only add "MAGNITUDE" if neither ?MAGNITUDE" or "M" is listed as ImageType (#851)

  neurolabusc

  committed
  373618d

• Only append PHASE, REAL, etc to ImageType if term or alias not already present (#851)

  neurolabusc

  committed
  5bff3c9

Commits on Aug 16, 2024

• Total Read-Out Time Documentation update for GEHC

  

  Jaemin Shin

  authored and

  Jaemin Shin

  committed
  23eb1ee

• Merge pull request #852 from mr-jaemin/development

  Show description for 6e20194
  neurolabusc

  authored
  6e20194

Commits on Aug 20, 2024

• WASM build

  neurolabusc

  committed
  64e6b43

Commits on Aug 26, 2024

• add wasm build for npm package

  taylorhanayikVBC

  committed
  db97160

• Merge pull request #856 from rordenlab/feature/add-wasm-npm-module

  Show description for b95524c
  neurolabusc

  authored
  b95524c

Commits on Aug 27, 2024

• Merge pull request #813 from CGSchwarzMayo/DeIdentificationMethod_json

  Show description for fda03a5
  neurolabusc

  authored
  fda03a5

Commits on Sep 11, 2024

• workaround for safari and allow nested directories

  hanayik

  committed
  404771c

• bump version for npm release

  hanayik

  committed
  c07f325

• Merge pull request #858 from rordenlab/bug/fix-safari-wasm-issues

  Show description for 382014a
  neurolabusc

  authored
  382014a

Commits on Sep 14, 2024

• Make PR813 compilation conditional (#861)

  neurolabusc

  committed
  4aca344

• clang-format

  neurolabusc

  committed
  4d4d23f

• AppVeyor Linux compile error

  neurolabusc

  committed
  52f0606

• Another attempt for DT_UNKNOWN being defined in dirent.h

  neurolabusc

  committed
  9f8b3b7

Commits on Sep 23, 2024

• Fix typo found by codespell

  Show description for fd87967
  DimitriPapadopoulos

  committed
  fd87967

Commits on Sep 26, 2024

• Merge pull request #866 from DimitriPapadopoulos/codespell

  Show description for 035b36b
  neurolabusc

  authored
  035b36b

Commits on Sep 28, 2024

• Enhanced Mediso (#853)

  neurolabusc

  committed
  5840e71

Commits on Sep 29, 2024

• Deidentification (#861)

  neurolabusc

  committed
  b254e16

Commits on Sep 30, 2024

• Reduce stack pressure (#867)

  neurolabusc

  committed
  e851138

• Reduce stack pressure (#867)

  neurolabusc

  committed
  6b56b91

• Reduce stack pressure (#867)

  neurolabusc

  committed
  d8aacc5

• Close quote (#869)

  neurolabusc

  committed
  d633868

Commits on Oct 2, 2024

• Reformat json DeidentificationMethod

  Show description for f3f8e66
  CGSchwarzMayo

  committed
  f3f8e66

• refactor file handling

  hanayik

  committed
  2d98d4f

Commits on Oct 3, 2024

• Merge pull request #872 from rordenlab/wasm/refactor-for-drop

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  neurolabusc

  authored
  15b5356

• Merge pull request #871 from CGSchwarzMayo/DeIdentificationMethod_json_list2

  Show description for f5bed4e
  neurolabusc

  authored
  f5bed4e

Commits on Oct 4, 2024

• XA60/61 invalid slice times and 0018,9155 for SMS (#870)

  neurolabusc

  committed
  3130690

Commits on Oct 12, 2024

• Experimental fix for issue 797 (#797)

  neurolabusc

  committed
  47ef6d5

• Adjust for ms

  neurolabusc

  committed
  e3fc3e2

• Revert (#797)

  neurolabusc

  committed
  7ff30fc

Commits on Oct 15, 2024

• kludge for inaccurate start time (0021,1104) in first volume (#875)

  neurolabusc

  committed
  c0be114

Commits on Oct 21, 2024

• Update CMake min version.

  Show description for ed6a38b
  ningfei

  committed
  ed6a38b

• Include tinydir.h earlier; avoid R-unfriendly calls

  jonclayden

  committed
  b5faec4

• Remove R special case now that stack usage is less

  jonclayden

  committed
  6a3a4b4

• Small fixes: out-of-bounds or NULL accesses, memory leaks, uninitialised decision variables

  jonclayden

  committed
  cf9f981

• Merge pull request #876 from jonclayden/divest-1.1

  Show description for b48c597
  neurolabusc

  authored
  b48c597

Commits on Oct 22, 2024

• Deidentification refactor (#877)

  neurolabusc

  committed
  1657730

Commits on Oct 23, 2024

• ISO_IR 100 -> UTF8 for DeidentificationMethod (#878)

  neurolabusc

  committed
  fd81790

Commits on Oct 24, 2024

• ImageType reporting (#881)

  neurolabusc

  committed
  2ffaba7

Commits on Oct 25, 2024

• strncat not strcat (#883)

  neurolabusc

  committed
  ead9ed1

Commits on Oct 31, 2024

• Improve PET and PET BIDS (#886)

  neurolabusc

  committed
  b3605c4

Commits on Nov 6, 2024

• Siemens series instance UID issues (#394)

  neurolabusc

  committed
  29c224b

• Detect variability in first frame's image position patient (#888)

  neurolabusc

  committed
  2c062f5

Commits on Nov 13, 2024

• Table position from CSA (#890)

  neurolabusc

  committed
  586ca3c

• Update qForm with crop (#889)

  neurolabusc

  committed
  74e6cc3

Commits on Nov 27, 2024

• Removing slice timing data for derived and localizer data (e.g. Siemens derived FA maps).

  neurolabusc

  committed
  e922fe8

Commits on Dec 8, 2024

• Do not convert enhanced DICOMs where slice orientation varies within a series (#894)

  neurolabusc

  committed
  7067959

• Update dcm_qa submodules.

  ningfei

  committed
  fae2720