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new stable release (v1.0.20241208) #896

Merged
merged 105 commits into from
Dec 8, 2024
Merged

new stable release (v1.0.20241208) #896

merged 105 commits into from
Dec 8, 2024

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neurolabusc
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Robert Reid and others added 30 commits December 22, 2023 13:45
issue 769: relax the check for bvec components > 1 a bit.
029275f
Merge branch 'development' of https://github.com/rordenlab/dcm2niix i…
ac8a646 
…nto development
GE UHP/7T Diffusion SliceTiming (#796)
987fdfb
@mr-jaemin
Merge pull request #798 from mr-jaemin/development
66f6427 
GE UHP/7T Diffusion SliceTiming (#796)
@yhuang43
DCM2NIIXFSLIB changes
79bcd4c 
  - dcm2niix_fswrapper: allow subset of dcm2niix options to be set through mri_convert
  - dcmListDump(): use environment variable MGH_DCMUNPACK_IMAGELIST to communicate with dcm2niix where to output imagelist.dat
  - retrieve/output 'pulseSequenceDetails (tSequenceFileName)' from DICOM CSA header (0029,1020)
@neurolabusc
Merge pull request #800 from yhuang43/development
bca228c 
DCM2NIIXFSLIB changes
@neurolabusc
Philips renaming (#795)
cb60b43
Merge branch 'development' of https://github.com/rordenlab/dcm2niix i…
e7aaa1b 
…nto development
@neurolabusc
PET BIDS (#802)
c975d1f
@neurolabusc
codespell
cc7d7f3
@neurolabusc
more PET support (#802)
f8baa94
@mr-jaemin
GE UHP/7T Diffusion SliceTiming Update (#796)
e5256f8
@mr-jaemin
GE UHP/7T Diffusion SliceTiming Update2
8becfeb
@neurolabusc
Renambed ASL fields to match new BIDS specification (https://bids-spe…
484de5b 
…cification.readthedocs.io/en/stable/glossary.html#labelingpulseflipangle-metadata)
@mr-jaemin
Merge branch 'rordenlab:development' into development
11b64e3
@mr-jaemin
Merge pull request #805 from mr-jaemin/development
856d032 
Development
@neurolabusc
Restore PR modifications (484de5b)
1858e1c
@neurolabusc
ASL BIDS suggestions from @jan-petr
04d6d49
@neurolabusc
Another suggestion from @jan-petr
d635970
@neurolabusc
Experimental start for reproin support
1b4505e
@neurolabusc
Unlatch 0400,0561 based on nesting depth (#807)
550b9e2
GE AcquisitionDuration (#808)
b256504
GE AcquisitionDuration minor (#808)
608f636
@neurolabusc
Merge pull request #810 from mr-jaemin/development
ae1cb29 
GE AcquisitionDuration (#808)
@CGSchwarzMayo
Add DeidentificationMethod and DeidentificationMethodCodeSequence to …
eba090b 
…json
Merge branch 'development' of https://github.com/rordenlab/dcm2niix i…
d17927e 
…nto development
Disable XA partial vol detection for single slice files (#742)
70abd5e
Fix CSA n_tags check (#633)
d53a237
@CGSchwarzMayo
Merge branch 'rordenlab:master' into DeIdentificationMethod_json
dd56f9a
@CGSchwarzMayo
More robust detection of whether tags are inside DeidentificationMeth…
ed3f8a5 
…odCodeSequence
neurolabusc and others added 29 commits September 30, 2024 08:52
@neurolabusc
Reduce stack pressure (#867)
6b56b91
@neurolabusc
Reduce stack pressure (#867)
d8aacc5
@neurolabusc
Close quote (#869)
d633868
@CGSchwarzMayo
Reformat json DeidentificationMethod
f3f8e66 
* Was a single string separated by \\: "xx\\yy"
* Now a json list ["xx", "yy"]
* Also now includes DeidentificationMethod when encountered without DeidentificationMethodCodeSequence
@hanayik
refactor file handling
2d98d4f
@neurolabusc
Merge pull request #872 from rordenlab/wasm/refactor-for-drop
15b5356 
refactor file handling in WASM wrapper
@neurolabusc
Merge pull request #871 from CGSchwarzMayo/DeIdentificationMethod_jso…
f5bed4e 
…n_list2

Reformat json DeidentificationMethod
@neurolabusc
XA60/61 invalid slice times and 0018,9155 for SMS (#870)
3130690
@neurolabusc
Experimental fix for issue 797 (#797)
47ef6d5
@neurolabusc
Adjust for ms
e3fc3e2
@neurolabusc
Revert (#797)
7ff30fc
@neurolabusc
kludge for inaccurate start time (0021,1104) in first volume (#875)
c0be114
@ningfei
Update CMake min version.
ed6a38b 
Also run dos2unix for CMakeLists file.
@jonclayden
Include tinydir.h earlier; avoid R-unfriendly calls
b5faec4
@jonclayden
Remove R special case now that stack usage is less
6a3a4b4
@jonclayden
Small fixes: out-of-bounds or NULL accesses, memory leaks, uninitiali…
cf9f981 
…sed decision variables
@neurolabusc
Merge pull request #876 from jonclayden/divest-1.1
b48c597 
Changes from divest 1.1
@neurolabusc
Deidentification refactor (#877)
1657730
@neurolabusc
ISO_IR 100 -> UTF8 for DeidentificationMethod (#878)
fd81790
@neurolabusc
ImageType reporting (#881)
2ffaba7
@neurolabusc
strncat not strcat (#883)
ead9ed1
@neurolabusc
Improve PET and PET BIDS (#886)
b3605c4
@neurolabusc
Siemens series instance UID issues (#394)
29c224b
@neurolabusc
Detect variability in first frame's image position patient (#888)
2c062f5
@neurolabusc
Table position from CSA (#890)
586ca3c
@neurolabusc
Update qForm with crop (#889)
74e6cc3
@neurolabusc
Removing slice timing data for derived and localizer data (e.g. Sieme…
e922fe8 
…ns derived FA maps).
@neurolabusc
Do not convert enhanced DICOMs where slice orientation varies within …
7067959 
…a series (#894)
@ningfei
Update dcm_qa submodules.
fae2720
@neurolabusc neurolabusc merged commit 98152e1 into master Dec 8, 2024
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