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SignInt & FTP fix #1989

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merged 34 commits into from
Dec 2, 2024
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b72cd81
wrapper4insty is added as calcSignatureInteractions()
karolamik13 Nov 9, 2024
4505312
fstrings removed
karolamik13 Nov 9, 2024
b8cdafc
replacing additional fstrings
karolamik13 Nov 9, 2024
6345be8
extractMultiModelPDB
karolamik13 Nov 9, 2024
f088e5a
fstrings replaced
karolamik13 Nov 10, 2024
92e6c88
Merge branch 'prody-signint' of github.com:karolamik13/ProDy into pro…
karolamik13 Nov 10, 2024
0b8da0f
fixer import
karolamik13 Nov 10, 2024
81f1e0c
Merge remote-tracking branch 'jamesmkrieger/pdb_ftp' into prody-signint
karolamik13 Nov 10, 2024
1260011
extractMultiModelPDB improvements
karolamik13 Nov 10, 2024
f2956d9
createFoldseekAlignment
karolamik13 Nov 10, 2024
ca71719
fix in kwargs, createFoldseekAlignment
karolamik13 Nov 10, 2024
f736b8a
LOGGER info added to SignInt functions
karolamik13 Nov 10, 2024
0112652
runFoldseek is added
karolamik13 Nov 10, 2024
f0565f2
LOGGER changes
karolamik13 Nov 11, 2024
ba342f9
cov-mode parameter to foldseek run
karolamik13 Nov 11, 2024
05b4621
runFoldseek improvements with kwargs, docs
karolamik13 Nov 11, 2024
d31d183
changes in imports
karolamik13 Nov 11, 2024
9b79bd7
kwargs for plot_barh
karolamik13 Nov 12, 2024
6e342c4
fixing typos
karolamik13 Nov 12, 2024
5450f8c
kwargs for calcSignatureInteractions, optional removal of tmp files
karolamik13 Nov 12, 2024
1ec47c5
if for 'fixed_files' removed
karolamik13 Nov 13, 2024
6d34878
3to1 letter code is not replaced by AAMAP
karolamik13 Nov 13, 2024
ee64b51
Checks for database_folder exists
karolamik13 Nov 13, 2024
8c19c0f
additional checks and docs improvements
karolamik13 Nov 13, 2024
22ff338
runDali added
karolamik13 Nov 16, 2024
3dab901
Merge branch 'prody:main' into prody-signint
karolamik13 Nov 16, 2024
8a0019d
TypeError replaced by LOGGER.warn in runDali
karolamik13 Nov 16, 2024
f57418e
runBLAST form SignInter added
karolamik13 Nov 19, 2024
50a37d6
calcSignatureInteractions includes now analysis with MSA file [furthe…
karolamik13 Nov 22, 2024
566d340
reoeganization of runFoldseek and calcSignatureInteractions
karolamik13 Nov 27, 2024
12841bb
docs fix [InSty]
karolamik13 Nov 28, 2024
c7d4a99
final rearrangement of calcSignatureInteractions with MSA file
karolamik13 Dec 1, 2024
c159a34
Changes in docs
karolamik13 Dec 1, 2024
4a3f244
Merge branch 'main' into prody-signint
karolamik13 Dec 1, 2024
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