Code

SignInt & FTP fix#1989

Code

Merged

karolamik13 merged 34 commits intoprody:mainprody/ProDy:mainfrom karolamik13:prody-signintkarolamik13/ProDy:prody-signintCopy head branch name to clipboardDec 2, 2024

+995-30

Commits

Commits on Nov 9, 2024

• wrapper4insty is added as calcSignatureInteractions()

  karolamik13

  committed
  b72cd81

• fstrings removed

  karolamik13

  committed
  4505312

• replacing additional fstrings

  karolamik13

  committed
  b8cdafc

• extractMultiModelPDB

  karolamik13

  committed
  6345be8

Commits on Nov 10, 2024

• fstrings replaced

  karolamik13

  committed
  f088e5a

• Merge branch 'prody-signint' of github.com:karolamik13/ProDy into prody-signint

  karolamik13

  committed
  92e6c88

• fixer import

  karolamik13

  committed
  0b8da0f

• Merge remote-tracking branch 'jamesmkrieger/pdb_ftp' into prody-signint

  karolamik13

  committed
  81f1e0c

• extractMultiModelPDB improvements

  karolamik13

  committed
  1260011

• createFoldseekAlignment

  karolamik13

  committed
  f2956d9

• fix in kwargs, createFoldseekAlignment

  karolamik13

  committed
  ca71719

• LOGGER info added to SignInt functions

  karolamik13

  committed
  f736b8a

• runFoldseek is added

  karolamik13

  committed
  0112652

Commits on Nov 11, 2024

• LOGGER changes

  karolamik13

  committed
  f0565f2

• cov-mode parameter to foldseek run

  karolamik13

  committed
  ba342f9

• runFoldseek improvements with kwargs, docs

  karolamik13

  committed
  05b4621

• changes in imports

  karolamik13

  committed
  d31d183

Commits on Nov 12, 2024

• kwargs for plot_barh

  karolamik13

  committed
  9b79bd7

• fixing typos

  karolamik13

  committed
  6e342c4

• kwargs for calcSignatureInteractions, optional removal of tmp files

  karolamik13

  committed
  5450f8c

Commits on Nov 13, 2024

• if for 'fixed_files' removed

  karolamik13

  committed
  1ec47c5

• 3to1 letter code is not replaced by AAMAP

  karolamik13

  committed
  6d34878

• Checks for database_folder exists

  karolamik13

  committed
  ee64b51

• additional checks and docs improvements

  karolamik13

  committed
  8c19c0f

Commits on Nov 16, 2024

• runDali added

  karolamik13

  committed
  22ff338

• Merge branch 'prody:main' into prody-signint

  karolamik13

  authored
  3dab901

• TypeError replaced by LOGGER.warn in runDali

  karolamik13

  committed
  8a0019d

Commits on Nov 19, 2024

• runBLAST form SignInter added

  karolamik13

  committed
  f57418e

Commits on Nov 22, 2024

• calcSignatureInteractions includes now analysis with MSA file [further reorganization needed]

  karolamik13

  committed
  50a37d6

Commits on Nov 27, 2024

• reoeganization of runFoldseek and calcSignatureInteractions

  karolamik13

  committed
  566d340

Commits on Nov 28, 2024

• docs fix [InSty]

  karolamik13

  committed
  12841bb

Commits on Dec 1, 2024

• final rearrangement of calcSignatureInteractions with MSA file

  karolamik13

  committed
  c7d4a99

• Changes in docs

  karolamik13

  committed
  c159a34

• Merge branch 'main' into prody-signint

  karolamik13

  authored
  4a3f244