CFIR-Index v2.0

The source code for CFIR-Index.

Fixed Issues:

• Fixed an issue where the mass of y-ions may not have +18 (H2O)
• Added clustering of mods by distance of mod AA from N-terminal and C-terminal
• No more sub-linear querying scalability for 16+ cores.
• Reads the mods specs from file.

Known Issues:

• Configuration settings and modification specification must be done in the respective source code files and the code must be recompiled. (Full file based param initialization in progress)
• Will crash if no mods info in param.txt or if the peptides list is empty.

SLM-Transform v1.0.0

Initial Release of SLM-Transform

Known Limitations:

• Max index partition size allowed is: 25Million in default settings
• SLM-Index does not use disk: Mem Footprint = 0.37GB/million peptides + any memory for driver application

Known Issues:

• None to author's knowledge.