Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

WIP: start working on parallel table construction from sequence chunks #83

Open
wants to merge 31 commits into
base: main
Choose a base branch
from

Conversation

ctb
Copy link
Contributor

@ctb ctb commented Oct 28, 2024

This PR adds a parallel_consume method that does the following:

  1. divides the sequence up into N chunks based on a chunk_size parameter;
  2. in parallel, consumes each chunk and creates a vector of KmerCountTable objects;
  3. in serial, merges all items from the various KmerCountTable objects into the main table;

Base automatically changed from combine_rc to integrate_kmer_tracking October 28, 2024 03:22
Base automatically changed from integrate_kmer_tracking to main October 28, 2024 03:34
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants