Merge branch 'main' into integrate_kmer_tracking

oxli-bio · Oct 12, 2024 · 6b45e32 · 6b45e32
2 parents 4abe6c2 + 443106c
commit 6b45e32
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diff --git a/.github/workflows/ruff.yml b/.github/workflows/ruff.yml
@@ -5,12 +5,13 @@ jobs:
     runs-on: ubuntu-latest
     permissions:
       # Give the default GITHUB_TOKEN write permission to commit and push the changed files.
-      contents: write
+      contents: write # Allows reading and writing repository contents (e.g., commits)
+      pull-requests: write # Allows reading and writing pull requests
     steps:
       - uses: actions/checkout@v4
         with:
           ref: ${{ github.sha }}
-          token: ${{ secrets.ACTION_TOKEN }}
+          token: ${{ secrets.GITHUB_TOKEN }}
       - uses: chartboost/ruff-action@v1
         with:
           src: './src/python'

diff --git a/Cargo.lock b/Cargo.lock
diff --git a/Cargo.toml b/Cargo.toml
@@ -17,4 +17,4 @@ pyo3 = { version="0.22.3", features = ["extension-module", "anyhow"] }
 rayon = "1.10.0"
 serde = { version = "1.0.210", features = ["derive"] }
 serde_json = "1.0.128"
-sourmash = "0.15.1"
+sourmash = "0.15.2"