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    21 repositories

    • lab-wiki

      Public
      Wallace Lab Wiki Page TEST!
      1•0•0•0•Updated Dec 13, 2024Dec 13, 2024

    • paper-li-2024-g2f-stalk-microbiome

      Public
      Pipeline for Hanxia Li's analysis of the Genomes to Fields maize stalk microbiome
      R
      •1•0•0•0•Updated Dec 11, 2024Dec 11, 2024

    • r-reference-8010

      Public
      R reference website for CRSS/PBGG 8010
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Oct 16, 2024Oct 16, 2024

    • paper-kvitko-relic-2024

      Public
      Metagenomic analysis of RELIC glacial meltwater samples
      HTML
      •0•0•0•0•Updated Sep 5, 2024Sep 5, 2024

    • paper-corut-fescue-heat-2024

      Public
      R
      •0•1•0•0•Updated Feb 27, 2024Feb 27, 2024

    • paper-corut-cardon-peanut-flowering-2024

      Public
      Python
      •0•0•0•0•Updated Feb 27, 2024Feb 27, 2024

    • paper-laspisa-insulators-2023

      Public
      Bladderwort Insulator Analyses
      Shell
      •0•0•0•0•Updated Aug 15, 2023Aug 15, 2023

    • paper-li-living-mulch-2021

      Public
      publish living mulch data and scripts
      R
      •0•0•0•0•Updated Jul 10, 2023Jul 10, 2023

    • paper-schultz-indigo-g2f-2023

      Public
      Analysis of bacteria and fungal reads from Indigo Ag sequencing of US commercial maize
      R
      •0•0•1•0•Updated Jun 23, 2023Jun 23, 2023

    • paper-schultz-microbiome-2023

      Public
      Exploring the differences between inbred and hybrid maize. This repo only contains scripts for my combined data sets.
      R
      •0•0•0•0•Updated Jan 20, 2023Jan 20, 2023

    • paper-punnuri-aphids-2021

      Public
      FarmCPU resampling GWAS and figure creation for Punnuri et al 2021 sorghum aphid resistance paper
      R
      •0•2•0•0•Updated May 11, 2022May 11, 2022

    • paper-schultz-endophytes-2021

      Public
      Final Code and Data for Maize Endophyte Manuscript
      R
      •0•0•0•0•Updated Sep 20, 2021Sep 20, 2021

    • paper-johnson-hemp-gs

      Public
      Analysis pipeline for Johnson et al 2021 (Hemp genotyping and genomic selection)
      R
      •0•2•0•0•Updated Jun 22, 2021Jun 22, 2021

    • paper-minor-millets-2018

      Public archive
      Code for GBS and analysis of Kodo, Proso, and Little millets from Johnson et al 2019, Genome-wide Population Structure Analyses of Three Minor Millets
      Python
      •0•3•0•0•Updated Jun 10, 2021Jun 10, 2021

    • paper-fonio-diversity-2020

      Public
      R
      •0•1•0•0•Updated Oct 21, 2020Oct 21, 2020

    • paper-giangacomo-16s-methods

      Public
      Code for Giangacomo et al paper on 16s amplicon methodology
      R
      •0•0•0•0•Updated Sep 22, 2020Sep 22, 2020

    • paper-maize-rhizosphere-2017

      Public archive
      Pipeline for analysis of heritability and variance components in the maize rhizosphere
      Python
      •2•7•0•0•Updated Oct 11, 2019Oct 11, 2019

    • collab-carpentriesuga-DEPREACTED

      Public archive
      CSS
      •
      Other
      •0•0•4•0•Updated Sep 26, 2019Sep 26, 2019

    • paper-dawe-ab10-2018

      Public archive
      Transmission distortion of Ab10 chromosome
      Python
      •0•0•0•0•Updated Nov 28, 2018Nov 28, 2018

    • paper-sorghum-nematodes-2018

      Public archive
      Single-marker analysis pipeline for Harris-Shultz et al, A Novel QTL for Root-Knot Nematode Resistance is identified from a South African Sweet Sorghum Line
      R
      •0•0•0•0•Updated Oct 26, 2018Oct 26, 2018

    • paper-maize-phyllosphere-2014

      Public archive
      Analysis pipeline for Wallace et al 2018, Quantitative Genetic Analysis of the Maize Leaf Microbiome
      Python
      •2•1•0•0•Updated Aug 3, 2018Aug 3, 2018