Transmission distortion of Ab10 chromosome
This repository contains the code for analyzing distortion of the Ab10 chromosomal knob from Dawe et al 2018, "A Kinesin-14 Motor Activates Neocentromeres to Promote Meiotic Drive in Maize" (DOI 10.1016/j.cell.2018.03.009). Both code and data files are provided to generate the data and figures related to this analysis. Code is provided free of charge, without a warranty of any sort, etc.
The genotypes used for this analysis were received from the Genomic Diversity Facility at Cornell University. They were called from genotyping-by-sequencing data using the Tassel5-GBS Production Pipeline using the ZeaGBSv2.7 Production TOPM (Glaubitz et al. 2014 PLoS ONE 9: e90346). Imputation was performed with FILLIN (Swarts et al. 2014 Plant Genome 7(3)), using the "V5" set of donor haplotypes available at Panzea.org.