Repositories list

• Chlamydomonas_barcoding

  Public
  Applying Bamboozle barcoding to Chlamydomonas strains

  HTML

  •0•0•0•0•Updated Feb 29, 2024Feb 29, 2024

• AlleleIsoformSpecificExpression

  Public
  Investigating allele- and isoform-specific expression in Skeletonema marinoi

  HTML

  •0•0•0•0•Updated Aug 31, 2023Aug 31, 2023

• Survivors_of_the_Sea

  Public
  Survivors of the Sea RNA sequencing project

  HTML

  •0•0•0•0•Updated Aug 29, 2023Aug 29, 2023

• Skeletonema_marinoi_genome_project

  Public
  F*

  •0•0•1•0•Updated Jun 12, 2023Jun 12, 2023

• misc

  Public
  Miscellaneous scripts

  Python

  •0•0•0•0•Updated Jun 7, 2023Jun 7, 2023

• Bamboozle

  Public
  Bam-file parser

  HTML

  •

  GNU General Public License v3.0

  •0•5•8•0•Updated Mar 21, 2023Mar 21, 2023

• NordicMicroalgaeDifferentialExpression

  Public
  Differential expression of Skeletonema marinoi and Nannochloropsis granulata during different seasons and growth phases

  0•0•0•0•Updated Dec 15, 2022Dec 15, 2022

• Reproducible-analysis-of-eDNA-for-national-biodiversity-monitoring-programs

  Public
  This project is funded by the Swedish Environmental Protection Agency. https://www.naturvardsverket.se/om-miljoarbetet/forskning/miljoforskning/forskningssatsningar-samhalle/digitalisering-som-stod-for-en-hallbar-forvaltning/

  HTML

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Oct 20, 2022Oct 20, 2022

• Arctic_plant_chloproplast_genomes

  Public
  HTML

  •0•0•0•0•Updated Sep 24, 2022Sep 24, 2022

• Live2Tell

  Public
  0•0•0•0•Updated Jun 30, 2022Jun 30, 2022

• Loss_of_function_mutations

  Public
  HTML

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 15, 2020Dec 15, 2020

• sequence_capture

  Public
  Scripts used for finding candidate probe sequences for sequence capture.

  F*

  •1•0•0•0•Updated Jun 29, 2020Jun 29, 2020

• whatisit

  Public
  Code used in the Skeletonema marinoi genome project

  Python

  •0•0•0•0•Updated Nov 25, 2019Nov 25, 2019

• Fucus_vesiculosus_genome_project

  Public
  F*

  •1•0•1•0•Updated Sep 5, 2019Sep 5, 2019

• Metagenomic_pipeline

  Public
  A metagenomic pipeline for making sense of whole genome data from diatom cultures. These datasets are often full of bacterial sequences, sometimes of high quality, and the diatom fraction of the reads can be difficult to estimate. The pipeline can generate and visualise an estimate of how much data originates from the target species if reference…

  Python

  •0•1•0•0•Updated Feb 20, 2019Feb 20, 2019

• Pipeline_vilma

  Public
  Python

  •0•1•3•0•Updated Feb 18, 2019Feb 18, 2019

• sp2

  Public
  Python

  •0•0•0•0•Updated Aug 30, 2018Aug 30, 2018

• Radman

  Public
  A tool for parsing RAD-data in csv format

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Mar 18, 2018Mar 18, 2018

• pairSeq

  Public
  Find pairs of paired end sequencing reads in two files

  Python

  •0•0•0•0•Updated Oct 12, 2017Oct 12, 2017

• FALCON-code

  Public
  Code used for working with the FALCON assembler for PacBio sequences (https://github.com/PacificBiosciences/FALCON).

  Python

  •

  Other

  •0•0•0•0•Updated Feb 24, 2017Feb 24, 2017

• Cinchona_calisaya_genome_project

  Public
  HTML

  •0•0•0•0•Updated Jan 5, 2017Jan 5, 2017