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@sbi-rostock Department of Systems Biology and Bioinformatics

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    16 repositories

    • AIR

      Public
      The Atlas of Inflammation Resolution
      JavaScript
      •3•4•0•1•Updated Dec 2, 2024Dec 2, 2024

    • ExpressionToMINERVA

      Public
      JavaScript
      •0•0•0•0•Updated Apr 24, 2024Apr 24, 2024

    • Hoch_et_al_LM_GRNs

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Apr 1, 2024Apr 1, 2024

    • Tr14_vs_Diclofenac

      Public
      0•0•0•0•Updated Mar 1, 2023Mar 1, 2023

    • GEMtractor

      Public
      Trim, extract, and convert GEMs
      Python
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated May 28, 2021May 28, 2021

    • CombineArchiveWeb

      Public
      Web interface to create/modify/share CombineArchives -- see also https://github.com/binfalse/CombineArchive
      JavaScript
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Oct 1, 2020Oct 1, 2020

    • CombineArchive

      Public
      Java library to read/write/create/manipulate/... CombineArchives
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •5•0•0•0•Updated Sep 18, 2020Sep 18, 2020

    • triplexer

      Public
      A computational pipeline that builds the backend database of the TriplexRNA: a database of cooperative microRNAs and their mutual targets.
      Python
      •1•0•2•0•Updated Jul 7, 2020Jul 7, 2020

    • forna-serve

      Public
      A customized ViennaRNA forna web-server to display RNA triplexes as represented in the TriplexRNA database.
      Dockerfile
      •1•0•0•0•Updated May 15, 2020May 15, 2020

    • nupack-serve

      Public
      A wrapper for the NUPACK software suite, which removes I/O bound operations and returns results in the JSON format
      C
      •1•1•0•0•Updated May 15, 2020May 15, 2020

    • LoRAS

      Public
      Localized Randomized Affine Shadowsampling (LoRAS) oversampling technique
      Jupyter Notebook
      •
      MIT License
      •14•4•0•0•Updated Aug 24, 2019Aug 24, 2019

    • forna

      Public
      Create force-directed graphs of RNA secondary structures.
      JavaScript
      •
      Apache License 2.0
      •31•0•0•0•Updated Oct 16, 2018Oct 16, 2018

    • TriplexRNA

      Public
      A database of cooperating microRNAs and their mutual targets
      1•0•0•0•Updated Sep 19, 2018Sep 19, 2018

    • XMLUtils

      Public
      toolkit useful for working with XML documents
      Java
      •
      Apache License 2.0
      •4•0•0•0•Updated Oct 20, 2017Oct 20, 2017

    • jCOMODI

      Public
      java api for comodi
      Java
      •
      Apache License 2.0
      •2•0•0•0•Updated Oct 19, 2017Oct 19, 2017

    • BiVeS-Core

      Public
      the core of BiVeS
      Java
      •
      Apache License 2.0
      •4•0•0•0•Updated Oct 19, 2017Oct 19, 2017