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@nmfs-ost Office of Science & Technology at NOAA Fisheries

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    32 repositories

    • satf

      Public
      R package that contains general tables and figures such as diagnostics plots, standard objects in an assessment report, and other important visualizations to interpret results of stock assessment models.
      R
      •
      Other
      •2•2•8•3•Updated Jan 17, 2025Jan 17, 2025

    • asar

      Public
      Partially automate a U.S. stock assessment report.
      latexquartostock-assessment-reports
      R
      •
      MIT License
      •4•15•16•4•Updated Jan 17, 2025Jan 17, 2025

    • PAM_National_Network

      Public
      National coordination page for the seven NOAA Fisheries Passive Acoustic Monitoring Programs
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Jan 17, 2025Jan 17, 2025

    • ss3-source-code

      Public
      The source code for Stock Synthesis (SS3).
      fisheriesstockassessmentstock-synthesis
      C++
      •
      Creative Commons Zero v1.0 Universal
      •16•38•107•1•Updated Jan 16, 2025Jan 16, 2025

    • AA-SI_aalibrary

      Public
      A python library used for fetching acoustics data.
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 14, 2025Jan 14, 2025

    • ss3-website

      Public
      SS3 Website
      stock-synthesis
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •0•0•6•0•Updated Jan 13, 2025Jan 13, 2025

    • journals

      Public
      Bibliography files for journals of interest to fisheries
      TeX
      •
      GNU General Public License v3.0
      •0•13•5•1•Updated Jan 13, 2025Jan 13, 2025

    • FIT-status

      Public
      nmfs-fish-tools status dashboard based on https://github.com/espinielli/status
      dashboardproject-managementnoaa-fit
      R
      •0•2•1•0•Updated Jan 13, 2025Jan 13, 2025

    • ss3-doc

      Public
      Source code for the Stock Synthesis manual and other documentation
      latexstock-synthesis
      TeX
      •
      Creative Commons Zero v1.0 Universal
      •2•4•15•0•Updated Jan 10, 2025Jan 10, 2025

    • asar-demo

      Public
      A tutorial on using asar for creating a stock assessment report at NOAA
      TeX
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Dec 31, 2024Dec 31, 2024

    • AA-SI_onboarding

      Public
      Active Acoustic Strategic Initiative onboarding site
      MIT License
      •0•0•0•0•Updated Dec 18, 2024Dec 18, 2024

    • AA-SI_main

      Public
      Apache License 2.0
      •1•2•0•0•Updated Dec 18, 2024Dec 18, 2024

    • AA-SI_echoSMs

      Public
      Acoustic scattering models for fish and plankton
      MIT License
      •0•0•0•0•Updated Dec 18, 2024Dec 18, 2024

    • Genomics_Resources

      Public
      Other
      •0•1•0•0•Updated Dec 11, 2024Dec 11, 2024

    • ss3-test-models

      Public
      Stock Synthesis models used for testing
      fisheriesstock-synthesis
      Scheme
      •
      Creative Commons Zero v1.0 Universal
      •1•3•12•0•Updated Dec 10, 2024Dec 10, 2024

    • ss3-user-examples

      Public
      Stock synthesis example models for users
      fisheriesstock-synthesis
      Scheme
      •
      Creative Commons Zero v1.0 Universal
      •5•1•7•0•Updated Dec 10, 2024Dec 10, 2024

    • fork-practice

      Public
      demo repo
      11•0•0•0•Updated Dec 9, 2024Dec 9, 2024

    • nmfs-ost.r-universe.dev

      Public
      CRAN-like repository for the nmfs-ost packages. Binaries are available for Windows and MacOS
      Creative Commons Zero v1.0 Universal
      •3•0•0•0•Updated Nov 22, 2024Nov 22, 2024

    • PAM_template_lab_manual

      Public template
      Template for development of regional lab manuals as part of the PAM SI.
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •0•2•3•0•Updated Oct 31, 2024Oct 31, 2024

    • public-test

      Public
      0•0•0•0•Updated Oct 18, 2024Oct 18, 2024

    • PAM_National_NMFS_Network

      Public
      NOAA Fisheries Passive Acoustic Monitoring Network
      R
      •
      Creative Commons Zero v1.0 Universal
      •1•4•1•0•Updated Oct 17, 2024Oct 17, 2024

    • k-doering-utilities

      Public
      Utility scripts and functions
      R
      •
      MIT License
      •0•1•0•0•Updated Jul 15, 2024Jul 15, 2024

    • .github

      Public
      templatesggt
      0•0•0•1•Updated Jun 24, 2024Jun 24, 2024

    • ss3-trainings

      Public template
      stock-synthesis
      Scheme
      •
      Creative Commons Zero v1.0 Universal
      •0•2•0•0•Updated Apr 22, 2024Apr 22, 2024

    • ss3-ssi

      Public
      The source code for Stock Synthesis Interface (SSI), the Stock Synthesis GUI
      qtstock-synthesis
      C++
      •
      Creative Commons Zero v1.0 Universal
      •0•2•0•0•Updated Apr 22, 2024Apr 22, 2024

    • minimizR

      Public
      Function minimizer for R
      C++
      •1•0•0•0•Updated Mar 24, 2024Mar 24, 2024

    • ss3-flowcharts

      Public archive
      Flowcharts for the tpl code
      fisheriesstock-synthesisdrawio
      Creative Commons Zero v1.0 Universal
      •0•1•0•0•Updated Dec 11, 2023Dec 11, 2023

    • ss3-tpl-format

      Public archive
      Fix problems in tpl code after formatting with clang-format
      C++
      •0•0•0•0•Updated Dec 5, 2023Dec 5, 2023

    • processR

      Public
      Concurrent Processing in R
      C++
      •0•0•0•0•Updated Nov 19, 2023Nov 19, 2023

    • ss3-workflows

      Public archive
      This repo contains a collection of reusable workflows found helpful for the SS3 project
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Oct 24, 2023Oct 24, 2023