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    13 repositories

    • prok-annotate

      Public
      Annotation pipeline for prokaryotic genomes
      Nextflow
      •
      GNU General Public License v3.0
      •2•3•1•0•Updated Nov 16, 2023Nov 16, 2023

    • prok-classify

      Public
      Assign objective taxonomic classifications to bacterial and archaeal genomes
      Nextflow
      •
      GNU General Public License v3.0
      •1•4•1•0•Updated Sep 5, 2023Sep 5, 2023

    • awemags

      Public
      aweMAGs: a fully automated workflow for eukariotic MAGs
      Nextflow
      •
      GNU General Public License v3.0
      •1•11•1•0•Updated Jun 6, 2023Jun 6, 2023

    • mag-illumina

      Public
      Metagenomic Assembled Genomes from Illumina sequences
      Nextflow
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated May 18, 2023May 18, 2023

    • docker

      Public
      Metashot docker images
      Dockerfile
      •0•0•0•0•Updated May 18, 2023May 18, 2023

    • metashot.github.io

      Public
      SCSS
      •0•0•0•0•Updated Mar 23, 2023Mar 23, 2023

    • busco

      Public
      Assessing the quality of genomes using busco
      Nextflow
      •
      GNU General Public License v3.0
      •0•5•1•0•Updated Mar 23, 2023Mar 23, 2023

    • prok-quality

      Public
      Assessing the quality of prokaryotic genomes, filtering and dereplication
      Nextflow
      •
      GNU General Public License v3.0
      •1•11•0•0•Updated Aug 26, 2022Aug 26, 2022

    • containment

      Public
      Containment estimation of genomes, proteomes, plasmids and other sequences
      Nextflow
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 10, 2022Aug 10, 2022

    • prok-snp

      Public
      SNVs identification and phylogenetic tree inference from prokaryotic isolates
      Nextflow
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 30, 2022Jun 30, 2022

    • prok-pan

      Public
      Pan genome analysis of closely related prokariotic genomes
      Nextflow
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Oct 12, 2021Oct 12, 2021

    • kraken2

      Public
      Taxonomic classification of reads and abundance estimation of species in metagenomic samples
      Nextflow
      •
      GNU General Public License v3.0
      •2•2•1•0•Updated Jun 18, 2021Jun 18, 2021

    • prok-assembly

      Public
      Assemble prokaryotic isolate genomes from Illumina reads
      Nextflow
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated May 12, 2021May 12, 2021