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metashot

MetaShot - A curated set of analysis pipelines for metagenomics and bacterial genomics

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  1. prok-quality prok-quality Public

    Assessing the quality of prokaryotic genomes, filtering and dereplication

    Nextflow 11 1

  2. awemags awemags Public

    aweMAGs: a fully automated workflow for eukariotic MAGs

    Nextflow 11 1

  3. busco busco Public

    Assessing the quality of genomes using busco

    Nextflow 5

  4. prok-classify prok-classify Public

    Assign objective taxonomic classifications to bacterial and archaeal genomes

    Nextflow 4 1

  5. prok-annotate prok-annotate Public

    Annotation pipeline for prokaryotic genomes

    Nextflow 3 2

  6. mag-illumina mag-illumina Public

    Metagenomic Assembled Genomes from Illumina sequences

    Nextflow 2 1

Repositories

Showing 10 of 13 repositories
  • prok-annotate Public

    Annotation pipeline for prokaryotic genomes

    metashot/prok-annotate’s past year of commit activity
    Nextflow 3 GPL-3.0 2 1 0 Updated Nov 16, 2023
  • prok-classify Public

    Assign objective taxonomic classifications to bacterial and archaeal genomes

    metashot/prok-classify’s past year of commit activity
    Nextflow 4 GPL-3.0 1 1 0 Updated Sep 5, 2023
  • awemags Public

    aweMAGs: a fully automated workflow for eukariotic MAGs

    metashot/awemags’s past year of commit activity
    Nextflow 11 GPL-3.0 1 1 0 Updated Jun 6, 2023
  • mag-illumina Public

    Metagenomic Assembled Genomes from Illumina sequences

    metashot/mag-illumina’s past year of commit activity
    Nextflow 2 GPL-3.0 1 0 0 Updated May 18, 2023
  • docker Public

    Metashot docker images

    metashot/docker’s past year of commit activity
    Dockerfile 0 0 0 0 Updated May 18, 2023
  • metashot.github.io Public
    metashot/metashot.github.io’s past year of commit activity
    SCSS 0 0 0 0 Updated Mar 23, 2023
  • busco Public

    Assessing the quality of genomes using busco

    metashot/busco’s past year of commit activity
    Nextflow 5 GPL-3.0 0 1 0 Updated Mar 23, 2023
  • prok-quality Public

    Assessing the quality of prokaryotic genomes, filtering and dereplication

    metashot/prok-quality’s past year of commit activity
    Nextflow 11 GPL-3.0 1 0 0 Updated Aug 26, 2022
  • containment Public

    Containment estimation of genomes, proteomes, plasmids and other sequences

    metashot/containment’s past year of commit activity
    Nextflow 0 GPL-3.0 0 0 0 Updated Aug 10, 2022
  • prok-snp Public

    SNVs identification and phylogenetic tree inference from prokaryotic isolates

    metashot/prok-snp’s past year of commit activity
    Nextflow 0 GPL-3.0 0 0 0 Updated Jun 30, 2022
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