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    58 repositories

    • Duotang_Archive

      Public
      Archive repo for CoVaRR-Net's Duotang SARS-CoV-2 Notebooks
      HTML
      •
      MIT License
      •0•0•0•0•Updated Aug 16, 2024Aug 16, 2024

    • BioPython-Convert

      Public
      Tool to interconvert between various bioinformatics formats that BioPython supports
      Roff
      •
      Other
      •1•4•2•1•Updated Jul 4, 2024Jul 4, 2024

    • islandviewer-ui

      Public
      Web UI for Islandviewer
      HTML
      •
      GNU General Public License v3.0
      •3•1•0•0•Updated Mar 8, 2024Mar 8, 2024

    • islandpath

      Public
      IslandPath standalone software
      Perl
      •
      GNU General Public License v3.0
      •4•31•7•1•Updated Nov 7, 2023Nov 7, 2023

    • IslandCompare

      Public
      Pipeline for detecting and annotating genomic islands and relationships between the respective genomes
      Vue
      •
      Other
      •2•4•39•20•Updated Aug 21, 2023Aug 21, 2023

    • islandviewer

      Public
      Perl library to run the IslandViewer backend
      Perl
      •
      GNU General Public License v3.0
      •2•2•0•1•Updated Aug 17, 2023Aug 17, 2023

    • galaxy-tools

      Public
      Central repo for all brinkman maintained Galaxy Tools
      Python
      •
      Other
      •2•2•10•1•Updated Jun 21, 2023Jun 21, 2023

    • curated_GIs

      Public
      Curated database of labelled Genomic Islands found in publications
      HTML
      •0•1•4•0•Updated Apr 28, 2023Apr 28, 2023

    • globecorr

      Public
      Vue
      •
      Other
      •1•0•5•0•Updated Apr 25, 2023Apr 25, 2023

    • psortb_commandline_docker

      Public
      PSORTb command-line docker - Dockerfile and "docker run" wrapper
      Perl
      •5•4•4•0•Updated Feb 3, 2023Feb 3, 2023

    • multiviz

      Public
      IslandCompare multi sequence visualization
      HTML
      •0•0•3•7•Updated Jan 7, 2023Jan 7, 2023

    • galaxy-client

      Public
      Galaxy web api client library
      JavaScript
      •
      Other
      •1•0•11•12•Updated Jan 5, 2023Jan 5, 2023

    • IslandViewerClient

      Public
      Python client for accessing the IslandViewer HTTP API. Use it to upload a genome, set the reference sequence, check job status and download results
      Python
      •
      MIT License
      •0•0•0•1•Updated Dec 8, 2022Dec 8, 2022

    • galaxy-container

      Public
      Galaxy container generation and cloud deployment recipes. Uses Buildah, Ansible, and Terraform.
      terraformcontainerizationgalaxyprojectbuildahdockerkubernetesansibledashboardclustergalaxy
      HCL
      •
      MIT License
      •0•0•25•0•Updated Sep 23, 2022Sep 23, 2022

    • cloud_recipes

      Public
      Kubernetes deployment recipies for various third party cloud providers
      HCL
      •
      MIT License
      •0•0•8•0•Updated Sep 23, 2022Sep 23, 2022

    • monitor

      Public
      Monitor web services and their SSL certificates
      JavaScript
      •
      MIT License
      •0•0•3•0•Updated Sep 22, 2022Sep 22, 2022

    • terraform-provider-galaxy

      Public
      Terraform provider to populate Galaxy instance and manage resources
      data-sciencebioinformaticstoolsterraformjobsproviderusersbioinformatics-pipelinegalaxyworkflows
      Go
      •
      MIT License
      •0•0•3•0•Updated Sep 21, 2022Sep 21, 2022

    • MicrobeDB

      Public
      Curated mirror of RefSeq Microbial Genomes. Available via CVMFS repository.
      databasegenbankbacteriancbicvmfsrefseqarchaeamicrobe
      Shell
      •
      MIT License
      •0•1•1•0•Updated Sep 21, 2022Sep 21, 2022

    • irida-container

      Public
      Deploy IRIDA locally using docker or to a major Cloud provider
      awsautomationgoogleclouddeploymentazureterraformcontaineririda
      HCL
      •
      MIT License
      •0•1•1•0•Updated Sep 21, 2022Sep 21, 2022

    • blend4go

      Public
      Galaxy API client library for Golang
      apiclientlibrarygalaxygalaxyprojectbioblend
      Go
      •
      MIT License
      •0•0•0•0•Updated Sep 21, 2022Sep 21, 2022

    • islandcompare-cli

      Public
      IslandCompare Command Line Interface
      islandcompare
      Python
      •
      Other
      •0•3•0•0•Updated Sep 20, 2022Sep 20, 2022

    • rgi_wrapper

      Public
      RGI galaxy project wrapper
      Python
      •1•0•0•0•Updated Sep 7, 2022Sep 7, 2022

    • galaxy

      Public
      Data intensive science for everyone.
      Python
      •
      Other
      •1k•0•0•0•Updated Aug 31, 2022Aug 31, 2022

    • cvmfs-csi

      Public
      Go
      •
      Apache License 2.0
      •29•1•0•0•Updated Aug 26, 2022Aug 26, 2022

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •3.3k•0•0•0•Updated Aug 17, 2022Aug 17, 2022

    • tools-iuc

      Public
      Tool Shed repositories maintained by the Intergalactic Utilities Commission
      HTML
      •
      MIT License
      •440•0•0•0•Updated Feb 9, 2022Feb 9, 2022

    • irida

      Public
      Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology
      Java
      •
      Apache License 2.0
      •31•0•0•0•Updated Dec 10, 2021Dec 10, 2021

    • irida-plugin-amr-detection

      Public
      IRIDA Plugin for AMR Detection
      Java
      •
      Apache License 2.0
      •3•0•0•0•Updated Aug 6, 2021Aug 6, 2021

    • url_minifier

      Public
      Minifier service that translates HTTP requests to DNS URI record lookups and redirects
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Jun 30, 2021Jun 30, 2021

    • vuex-orm-next

      Public
      The next iteration of Vuex ORM.
      TypeScript
      •
      MIT License
      •11•0•0•0•Updated Apr 28, 2021Apr 28, 2021