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    30 repositories

    • gohan

      Public
      Genomic Variants search API, working from the VCF format.
      Go
      •
      GNU Lesser General Public License v3.0
      •0•0•0•4•Updated Nov 4, 2024Nov 4, 2024

    • bento_beacon

      Public
      GA4GH Beacon v2 microservice for the Bento platform
      Python
      •0•0•0•1•Updated Nov 4, 2024Nov 4, 2024

    • katsu

      Public
      Phenopackets/FHIR-based metadata service for the Bento platform. Docs: https://metadata-service.readthedocs.io
      fhirchordphenopackets
      Python
      •
      GNU Lesser General Public License v3.0
      •6•4•0•3•Updated Nov 1, 2024Nov 1, 2024

    • bento_public

      Public
      A publicly accessible portal for clinical datasets, where users are able to see high-level statistics of the data available through predefined variables of interest and search the data using limited variables at a time.
      TypeScript
      •
      GNU Lesser General Public License v3.0
      •1•1•0•2•Updated Nov 1, 2024Nov 1, 2024

    • transcriptomics_data_service

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•2•Updated Nov 1, 2024Nov 1, 2024

    • bento_charts

      Public
      Recharts wrapper for use in Bento platform front-ends
      TypeScript
      •
      MIT License
      •0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

    • bento_auth_js

      Public
      Helper library for Bento frontends to authenticate with an OIDC IdP and authorize requests.
      TypeScript
      •
      MIT License
      •0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

    • bento_lib

      Public
      Shared Python resources for Bento platform microservices.
      Python
      •
      GNU Lesser General Public License v3.0
      •0•2•9•2•Updated Oct 31, 2024Oct 31, 2024

    • bento_web

      Public
      React-based data discovery and management portal for the Bento platform.
      reactchord
      JavaScript
      •
      GNU Lesser General Public License v3.0
      •2•0•27•1•Updated Oct 31, 2024Oct 31, 2024

    • bento_drs

      Public
      Data repository service for the Bento platform, based on GA4GH's DRS specification.
      Python
      •
      GNU Lesser General Public License v3.0
      •1•1•2•2•Updated Oct 31, 2024Oct 31, 2024

    • bento

      Public
      The official Bento distribution - orchestration and deployment infrastructure for the Bento platform.
      Python
      •
      GNU Lesser General Public License v3.0
      •2•7•0•4•Updated Oct 29, 2024Oct 29, 2024

    • bento_service_registry

      Public
      Microservice implementing the GA4GH Service Registry API for the Bento platform.
      flaskmicroservicega4ghchord
      Python
      •
      GNU Lesser General Public License v3.0
      •0•1•0•0•Updated Oct 26, 2024Oct 26, 2024

    • bento_drop_box_service

      Public
      Drop box and basic file management service for the Bento platform.
      Python
      •
      GNU Lesser General Public License v3.0
      •0•0•2•0•Updated Oct 26, 2024Oct 26, 2024

    • bento_wes

      Public
      Workflow execution service (based on GA4GH WES schemas) for the Bento platform.
      flaskworkflowga4ghchord
      Python
      •
      GNU Lesser General Public License v3.0
      •0•0•1•0•Updated Oct 26, 2024Oct 26, 2024

    • bento_notification_service

      Public
      Notification service for the Bento platform.
      Python
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated Oct 26, 2024Oct 26, 2024

    • bento_gateway

      Public
      OpenResty-based gateway, configuration, & continuous building for inclusion in Bento deployments.
      Smarty
      •
      GNU Lesser General Public License v3.0
      •0•0•0•1•Updated Oct 25, 2024Oct 25, 2024

    • bento_event_relay

      Public
      Socket.IO event relay for the Bento platform.
      JavaScript
      •
      GNU Lesser General Public License v3.0
      •0•0•1•0•Updated Oct 15, 2024Oct 15, 2024

    • bento_demo_dataset

      Public
      Partially synthetic demo dataset for Bento.
      bentodataset
      Python
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated Oct 10, 2024Oct 10, 2024

    • bento_aggregation_service

      Public
      Asynchronous search result aggregation service for the Bento platform.
      Python
      •
      GNU Lesser General Public License v3.0
      •0•2•12•0•Updated Oct 3, 2024Oct 3, 2024

    • bento_reference_service

      Public
      Reference data (genomes & annotations) service for the Bento platform.
      Python
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated Oct 2, 2024Oct 2, 2024

    • bento_authorization_service

      Public
      Permissions and authorization service for the Bento platform.
      Python
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • bento_keycloak_dist

      Public
      Keycloak Docker image distribution for the Bento platform. This is only relevant if a Bento instance is responsible for running its own IdP.
      Dockerfile
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated Sep 26, 2024Sep 26, 2024

    • fasta-checksum-utils

      Public
      Command-line utility and async Python library for checksumming FASTA files and individual contigs.
      Python
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated Sep 6, 2024Sep 6, 2024

    • bento_base_images

      Public
      Automated Bento platform base image building.
      Dockerfile
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated Aug 15, 2024Aug 15, 2024

    • bento-platform.github.io

      Public
      JavaScript
      •0•1•0•0•Updated Jul 31, 2024Jul 31, 2024

    • bento_build_action

      Public
      GitHub CI composite action to build development and production containers for Bento components.
      0•0•0•0•Updated Jul 18, 2024Jul 18, 2024

    • bento_variant_service

      Public archive
      Variant search and GA4GH Beacon microservice for the Bento platform.
      variantsbeaconga4ghchord
      Python
      •
      GNU Lesser General Public License v3.0
      •0•0•20•1•Updated Dec 9, 2022Dec 9, 2022

    • bento_images

      Public archive
      Dockerfile
      •0•0•0•0•Updated Nov 21, 2022Nov 21, 2022

    • bento_log_service

      Public archive
      Log-fetching microservice for the Bento platform
      Python
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated Apr 21, 2021Apr 21, 2021

    • igv.js

      Public archive
      Embeddable genomic visualization component based on the Integrative Genomics Viewer
      JavaScript
      •
      MIT License
      •229•0•0•0•Updated Oct 30, 2020Oct 30, 2020