Skip to content
This repository has been archived by the owner on Jan 16, 2023. It is now read-only.

Issues: bento-platform/bento_variant_service

20 Open 6 Closed
20 Open 6 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Add filter/qual to Variant/Call for more filtering/display ability
#30 opened Oct 30, 2020 by davidlougheed
Remove old chord_assembly_id header info
#29 opened Mar 25, 2020 by davidlougheed
Calculate hashes in workflows for multiple ingestion purposes
#27 opened Mar 18, 2020 by davidlougheed
Add gene annotation querying based on refseq
#26 opened Mar 12, 2020 by davidlougheed
2
Add ability to return private-queried rows as a VCF
#25 opened Mar 9, 2020 by davidlougheed
Incorporate N wildcard base into querying
#24 opened Mar 9, 2020 by davidlougheed
Add /files endpoint for linking to DRS objects for viewing in IGV.JS
#23 opened Mar 6, 2020 by davidlougheed
Move assembly ID to table level?
#21 opened Feb 28, 2020 by davidlougheed
Add table summary statistics by reference genome
#20 opened Feb 27, 2020 by davidlougheed
Fix beacon URL
#18 opened Feb 11, 2020 by davidlougheed
Should beacons return alleles with alt genotypes only??
#17 opened Feb 10, 2020 by davidlougheed
2
Test S3 support
#14 opened Feb 6, 2020 by davidlougheed
Add a more generic variants endpoint
#13 opened Feb 6, 2020 by davidlougheed
Add tests for no-results tables
#12 opened Jan 27, 2020 by davidlougheed
Add tests for helper script
#11 opened Jan 15, 2020 by davidlougheed
Speed up VCF annotation
#9 opened Jan 8, 2020 by davidlougheed
Add event pub/sub for refreshing vcf-loaded variants
#7 opened Jan 6, 2020 by davidlougheed
Investigate timing attacks with VCFs
#6 opened Jan 3, 2020 by davidlougheed
Add tests relating to the "pipelining" of detecting start/end pos for tabix
#5 opened Dec 17, 2019 by davidlougheed
Quality control and normalization pipeline
#3 opened Nov 26, 2019 by davidlougheed
3 tasks
ProTip! Adding no:label will show everything without a label.