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@VDBWRAIR Viral Diseases Branch - WRAIR/NMRC

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    46 repositories

    • ngs_mapper

      Public
      Genome Mapping Pipeline
      Python
      •
      GNU General Public License v2.0
      •10•8•35•7•Updated Dec 14, 2023Dec 14, 2023

    • umd-consensus

      Public
      Python
      •0•0•1•0•Updated Mar 11, 2020Mar 11, 2020

    • vartable

      Public
      Python
      •4•0•8•4•Updated Jan 28, 2020Jan 28, 2020

    • vdbwrair-torque

      Public
      Torque puppet configuration using src build
      Puppet
      •
      Apache License 2.0
      •0•0•4•1•Updated Jan 4, 2020Jan 4, 2020

    • novaseq-sync

      Public
      Python
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Aug 8, 2019Aug 8, 2019

    • ngs-hjf

      Public
      0•0•0•0•Updated Apr 17, 2019Apr 17, 2019

    • bioframework

      Public
      RobotFramework
      •
      GNU General Public License v2.0
      •0•0•4•4•Updated Apr 17, 2017Apr 17, 2017

    • path-pipe

      Public
      0•0•0•0•Updated Dec 6, 2016Dec 6, 2016

    • bio_bits

      Public
      Various bioinformatics scripts
      Python
      •
      GNU General Public License v2.0
      •4•3•14•7•Updated Aug 18, 2016Aug 18, 2016

    • pyfi

      Public
      PYthon Function Interface for haskell
      Haskell
      •
      MIT License
      •0•0•0•0•Updated Jun 21, 2016Jun 21, 2016

    • redsample

      Public
      Build sample management using redmine api
      Python
      •
      GNU General Public License v2.0
      •2•0•4•2•Updated May 30, 2016May 30, 2016

    • sync-py

      Public
      0•0•0•0•Updated May 30, 2016May 30, 2016

    • pux-starter-app

      Public
      Starter Pux application using webpack with hot-reloading and time-travel debug using pux-devtool.
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •39•0•4•3•Updated May 11, 2016May 11, 2016

    • subsamplebam

      Public
      Hopefully will allow you to randomly subsample a bam to get even depth
      Python
      •
      GNU General Public License v2.0
      •4•1•6•0•Updated Apr 13, 2016Apr 13, 2016

    • conda-recipes

      Public
      Anaconda/conda recipes for vdbwrair anaconda.org
      Shell
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 8, 2016Apr 8, 2016

    • pathdiscov

      Public
      Pathogen Discover Pipeline
      C
      •1•1•17•3•Updated Apr 7, 2016Apr 7, 2016

    • biotest

      Public
      Testing framework to make python unittesting easier
      Python
      •
      GNU General Public License v2.0
      •0•1•1•0•Updated Mar 23, 2016Mar 23, 2016

    • python_template

      Public
      Template for all Python Projects
      Python
      •
      GNU General Public License v2.0
      •1•0•2•1•Updated Mar 7, 2016Mar 7, 2016

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •
      MIT License
      •3.3k•0•2•0•Updated Mar 7, 2016Mar 7, 2016

    • vdbwrair-adclient

      Public
      Puppet adclient configuration
      HTML
      •
      Apache License 2.0
      •0•0•2•0•Updated Feb 26, 2016Feb 26, 2016

    • bioframes

      Public
      new repo for averagehat/biopandas
      Python
      •
      GNU General Public License v2.0
      •0•1•2•0•Updated Feb 11, 2016Feb 11, 2016

    • pipe-lang

      Public
      Scala
      •0•0•1•0•Updated Feb 5, 2016Feb 5, 2016

    • cutadapt

      Public
      cutadapt removes adapter sequences from sequencing reads
      Python
      •
      MIT License
      •130•1•0•0•Updated Feb 5, 2016Feb 5, 2016

    • pyjip

      Public
      JIP Pipeline System
      Python
      •
      Other
      •8•0•0•0•Updated Feb 1, 2016Feb 1, 2016

    • make.scala

      Public
      Scala
      •0•0•0•0•Updated Jan 31, 2016Jan 31, 2016

    • biosqlweb_pyramid

      Public
      Fork of biosqlweb but using pyramid
      JavaScript
      •
      GNU General Public License v2.0
      •2•0•3•2•Updated Jan 15, 2016Jan 15, 2016

    • puppet-module-cgroups

      Public
      Puppet module to manage cgroups
      Ruby
      •
      Apache License 2.0
      •21•0•0•0•Updated Jan 15, 2016Jan 15, 2016

    • quasi-sim

      Public
      simulate Illumina and PacBio reads of an artificially generated Quasispecies cloud
      0•0•0•0•Updated Jan 7, 2016Jan 7, 2016

    • bactpipeline

      Public
      Bacteria Pipeline modified from MRSN Bacteria Pipeline
      C
      •
      GNU General Public License v2.0
      •0•0•5•0•Updated Dec 23, 2015Dec 23, 2015

    • luigi

      Public
      Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.
      Python
      •
      Apache License 2.0
      •2.4k•0•1•0•Updated Dec 17, 2015Dec 17, 2015